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Series GSE52119 Query DataSets for GSE52119
Status Public on Dec 04, 2013
Title Evolution of Translation Regulation in budding Yeast
Organisms Saccharomyces cerevisiae; Saccharomyces paradoxus; Saccharomyces cerevisiae x Saccharomyces paradoxus
Experiment type Expression profiling by high throughput sequencing
Summary Comparison of translation efficiency in S. cerevisiae, S. paradoxus, and their F1 hybrid.
Overall design SRA submission number SRP028552; BioProject number PRJNA213844; Ribosome profiling was used to compare mRNA abundance, ribosome occupancy, and translation efficiency in two yeast species and their F1 hybrid.
Contributor(s) McManus CJ, May GE, Spealman P, Shteyman A
Citation(s) 24318730
BioProject PRJNA213844
Submission date Nov 05, 2013
Last update date May 15, 2019
Contact name Charles Joel McManus
Organization name Carnegie Mellon University
Department Biological Sciences
Lab McManus Lab
Street address 4400 Fifth Ave
City Pittsburgh
State/province Pennsylvania
ZIP/Postal code 15090
Country USA
Platforms (3)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL17601 Illumina HiSeq 2000 (Saccharomyces cerevisiae x Saccharomyces paradoxus)
GPL17602 Illumina HiSeq 2000 (Saccharomyces paradoxus)
Samples (12)
GSM1259972 S. cerevisiae RNA-seq Rep 1
GSM1259973 S. cerevisiae RNA-seq Rep 2
GSM1259974 S. cerevisiae Ribo-seq Rep 1
SRA SRP028552

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52119_RAW.tar 312.2 Mb (http)(custom) TAR (of BEDGRAPH)
GSE52119_Read_count_table.txt.gz 165.1 Kb (ftp)(http) TXT
GSE52119_Scer_orthologous_genes.bed.gz 101.0 Kb (ftp)(http) BED
GSE52119_Spar_orthologous_genes.bed.gz 101.5 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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