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Series GSE52646 Query DataSets for GSE52646
Status Public on Aug 04, 2014
Title Arabidopsis dark-induced senescence: wild type (Col-0) vs. pif quadruple (pif1pif3pif4pif5) mutant
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Transcriptional profiling of Arabidopsis dark-induced senescence comparing wild type (Col-0) with pif quadruple (pif1/3/4/5) mutant. After synchronized germination, the plants were grown under continuous white light for 7 days and transferred to darkness for 2 days to induce senescence. Goal was to determine the effect of PIFs on transcriptomic regulation during dark-induced senescence.
 
Overall design Two-condition experiment, wild type vs. pif quadruple mutant. Biological replicates: 3 wild type replicates, 3 mutant replicates.
 
Contributor(s) Choi G
Citation(s) 25119965
Submission date Nov 21, 2013
Last update date Apr 19, 2017
Contact name Jinkil Jeong
Organization name KAIST
Department Biological sciences
Lab Phytochrome lab (Dr.Giltsu Choi)
Street address 291 Daehak-ro
City Daejeon
ZIP/Postal code 305-701
Country South Korea
 
Platforms (1)
GPL9020 Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Feature Number version)
Samples (3)
GSM1273530 pifQ over WT replicate 1
GSM1273531 pifQ over WT replicate 2
GSM1273532 pifQ over WT replicate 3
Relations
BioProject PRJNA229514

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52646_RAW.tar 51.1 Mb (http)(custom) TAR (of TXT)
GSE52646_processed_data.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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