|
| Status |
Public on Dec 19, 2013 |
| Title |
Determinants of ribosome density in yeast |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Here, we use ribosome-footprint profiing and mRNA-seq to determine the average ribosome density on each gene in S. cerevisiae. We then perform quantitative modeling to identify the molecular determinants of ribosome density.
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| |
|
| Overall design |
Analysis of S. cerevisiae
|
| |
|
| Contributor(s) |
Weinberg DE, Eichhorn SW, Bartel DP |
| Citation(s) |
24476825 |
| Submission date |
Dec 13, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
David E Weinberg |
| E-mail(s) |
david.weinberg@ucsf.edu
|
| Phone |
4155149723
|
| Organization name |
University of California, San Francisco
|
| Lab |
Weinberg
|
| Street address |
600 16th Street, GH S572F
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
|
| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE53268 |
Translation rates and 3' ends of *S. cerevisiae* genes |
|
| Relations |
| BioProject |
PRJNA231673 |
| SRA |
SRP034076 |
