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Series GSE5340 Query DataSets for GSE5340
Status Public on Dec 01, 2008
Title Transcriptional response of Candida albicans to oral epithelial cells
Organism Candida albicans
Experiment type Expression profiling by array
Summary Candida albicans is exposed to a different host environment during oropharyngeal candidiasis (OPC) compared to hematogenously disseminated candidiasis. Thus, different virulence factors may be active during these two types of infection. However,little is known about the C. albicans genes that are required for the initiation and maintenance of OPC. To identify potential virulence factors relevant to this disease, we determined the transcriptional response of C. albicans to oral epithelial cells in vitro.
Keywords: cell interaction
 
Overall design Two different Candida albicans strains, CAI4-URA and a clinical isolate 7392, were used to identify the transcriptional response of C. albicans to oral epithelial cells. The strains were incubated with either the FaDu oral epithelial cell line or bare plastic for 45, 90, and 180 min. C. albicans RNA was extracted and the transcriptional profile of these organisms was analyzed using the C. albicans oligonucleotide microarray. The transcriptional response to Fadu cells was compared to that to bare plastic as a control condition. Each time point contains six biological replicates, three of which are from each C. albicans strain.
 
Contributor(s) Park H, Filler SG, Liu H, Solis N
Citation(s) 19700637
Submission date Jul 18, 2006
Last update date Jan 18, 2013
Contact name Hyunsook Park
E-mail(s) hpark@labiomed.org
Phone 310-222-6427
Organization name Los Angeles Biomedical Research Institute at Harbor-UCLA medical center
Department Infectious Diseases
Street address 1124 W carson st
City Torrance
State/province CA
ZIP/Postal code 90502
Country USA
 
Platforms (1)
GPL4007 LA Biomed_candida albicans_6266_1.0
Samples (18)
GSM120799 CAI4_Fadu_45min_exp1
GSM120800 CAI4_Fadu_45min_exp2
GSM120801 CAI4_Fadu_45min_exp3
Relations
BioProject PRJNA96243

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