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Series GSE54377 Query DataSets for GSE54377
Status Public on Sep 09, 2014
Title Different nucleosomal landscapes at early and late replicating origins in Saccharomyces cerevisiae
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Sequencing of mononucleosomal DNA during G1 and S phases in Saccharomyces cerevisiae
 
Overall design Samples from mononucleosomal DNA from WT and rpd3 mutant strains (W303-1a background) in G1 or in S phase in the presence of 0.2 M HU were sequenced (Illumina Genome Analyzer IIx) using the single-end read protocol
 
Contributor(s) Soriano I, Cabañas E, Vázquez E, Antequera F, Segurado M
Citation(s) 25218085
Submission date Jan 24, 2014
Last update date May 15, 2019
Contact name Enrique Vazquez de Luis
E-mail(s) quiquevzquez@gmail.com
Organization name CNIC
Lab Genomics Unit
Street address Melchor Fernandez Almagro, 3
City Madrid
State/province Madrid
ZIP/Postal code 28029
Country Spain
 
Platforms (1)
GPL13272 Illumina Genome Analyzer IIx (Saccharomyces cerevisiae)
Samples (4)
GSM1314109 MN_Scerevisiae_WT_G1
GSM1314110 MN_Scerevisiae_WT_S-phase
GSM1314111 MN_Scerevisiae_rpd3_G1
Relations
BioProject PRJNA236370
SRA SRP035644

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54377_RAW.tar 37.7 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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