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GEO accession:
Series GSE54905
Query DataSets for GSE54905
Status
Public on Jan 05, 2023
Title
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches
Organisms
Escherichia coli K-12
;
Escherichia coli str. K-12 substr. MG1655
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36685725
Submission date
Feb 12, 2014
Last update date
Feb 06, 2023
Contact name
Donghyuk Kim
E-mail(s)
dkim@unist.ac.kr
Organization name
UNIST
Department
Department of Chemical Engineering
Lab
Systems Biology Lab
Street address
50 UNIST-gil, Eonyang-eup, Ulju-gun
City
Ulsan
ZIP/Postal code
44919
Country
South Korea
Platforms (2)
GPL17439
Illumina MiSeq (Escherichia coli str. K-12 substr. MG1655)
GPL26204
NextSeq 550 (Escherichia coli K-12)
Samples (56)
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GSM1326355
NtrC ammonia 1 (ChIP-exo)
GSM1326356
NtrC ammonia 2 (ChIP-exo)
GSM1326357
NtrC glutamine 1 (ChIP-exo)
GSM1326358
NtrC glutamine 2 (ChIP-exo)
GSM1326359
NtrC cytidine 1 (ChIP-exo)
GSM1326360
NtrC cytidine 2 (ChIP-exo)
GSM1326361
NtrC cytosine 1 (ChIP-exo)
GSM1326362
NtrC cytosine 2 (ChIP-exo)
GSM1326363
RpoN ammonia 1 (ChIP-exo)
GSM1326364
RpoN ammonia 2 (ChIP-exo)
GSM1326365
RpoN glutamine 1 (ChIP-exo)
GSM1326366
RpoN glutamine 2 (ChIP-exo)
GSM1326367
RpoN cytidine 1 (ChIP-exo)
GSM1326368
RpoN cytidine 2 (ChIP-exo)
GSM1326369
RpoN cytosine 1 (ChIP-exo)
GSM1326370
RpoN cytosine 2 (ChIP-exo)
GSM1326371
Nac ammonia 1 (ChIP-exo)
GSM1326372
Nac ammonia 2 (ChIP-exo)
GSM1326373
Nac glutamine 1 (ChIP-exo)
GSM1326374
Nac glutamine 2 (ChIP-exo)
GSM1326375
Nac cytidine 1 (ChIP-exo)
GSM1326376
Nac cytidine 2 (ChIP-exo)
GSM1326377
Nac cytosine 1 (ChIP-exo)
GSM1326378
Nac cytosine 2 (ChIP-exo)
GSM1326379
RpoD ammonia 1 (ChIP-exo)
GSM1326380
RpoD ammonia 2 (ChIP-exo)
GSM1326381
RpoD glutamine 1 (ChIP-exo)
GSM1326382
RpoD glutamine 2 (ChIP-exo)
GSM1326383
RpoD cytidine 1 (ChIP-exo)
GSM1326384
RpoD cytidine 2 (ChIP-exo)
GSM1326385
RpoD cytosine 1 (ChIP-exo)
GSM1326386
RpoD cytosine 2 (ChIP-exo)
GSM1326399
ammonia 1 (RNA-Seq)
GSM1326400
ammonia 2 (RNA-Seq)
GSM1326401
glutamine 1 (RNA-Seq)
GSM1326402
glutamine 2 (RNA-Seq)
GSM1326403
cytidine 1 (RNA-Seq)
GSM1326404
cytidine 2 (RNA-Seq)
GSM1326405
cytosine 1 (RNA-Seq)
GSM1326406
cytosine 2 (RNA-Seq)
GSM6215811
Δnac ammonia 1 (RNA-seq)
GSM6215812
Δnac ammonia 2 (RNA-seq)
GSM6215813
Δnac glutamine 1 (RNA-seq)
GSM6215814
Δnac glutamine 2 (RNA-seq)
GSM6215815
Δnac cytidine 1 (RNA-seq)
GSM6215816
Δnac cytidine 2 (RNA-seq)
GSM6215817
Δnac cytosine 1 (RNA-seq)
GSM6215818
Δnac cytosine 2 (RNA-seq)
GSM6215819
ΔntrC ammonia 1 (RNA-seq)
GSM6215820
ΔntrC ammonia 2 (RNA-seq)
GSM6215821
ΔntrC glutamine 1 (RNA-seq)
GSM6215822
ΔntrC glutamine 2 (RNA-seq)
GSM6215823
ΔntrC cytidine 1 (RNA-seq)
GSM6215824
ΔntrC cytidine 2 (RNA-seq)
GSM6215825
ΔntrC cytosine 1 (RNA-seq)
GSM6215826
ΔntrC cytosine 2 (RNA-seq)
This SuperSeries is composed of the following SubSeries:
GSE54902
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]
GSE54904
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]
Relations
BioProject
PRJNA238009
Download family
Format
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MINiML formatted family file(s)
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TXT
Supplementary data files not provided
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