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Series GSE55583 Query DataSets for GSE55583
Status Public on Mar 06, 2014
Title Wnt5A Enhances Resistance of Melanoma Cells to Targeted BRAF Inhibitors
Organism Homo sapiens
Experiment type Expression profiling by array
Summary About half of all melanomas harbor a constitutively active mutant BRAFV600E/K kinase that can be selectively inhibited by targeted BRAF inhibitors (BRAFi). While patients treated with BRAFi initially exhibit measurable clinical improvement, the majority of patients eventually develop drug resistance and relapse. We observe significant elevation of WNT5A in a subset of tumors from patients exhibiting disease progression on BRAFi therapy. WNT5A transcript and protein are also elevated in BRAFi-resistant melanoma cell lines generated by long-term in vitro treatment with BRAFi. RNAi-mediated reduction in levels of endogenous WNT5A in melanoma decreases cell growth, increases apoptosis in response to BRAFi challenge, and decreases the activity of pro-survival AKT signaling. Overexpression of WNT5A conversely promotes melanoma growth and tumorigenesis and activates AKT signaling. Similar to WNT5A knockdown, knockdown of the WNT receptors FZD7 and RYK inhibits growth, sensitizes melanoma cells to BRAFi, and reduces AKT activation. Together, these findings suggest that chronic BRAF inhibition elevates WNT5A expression, which then acts through FZD7 and RYK to promote AKT signaling, leading to increased growth and therapeutic resistance. Increased WNT5A expression in BRAFi-resistant melanomas also correlates with an associated transcriptional signature, which identifies potential therapeutic targets to reduce clinical resistance to BRAFi.
 
Overall design Expression of WNT5A-correlated genes was compared in melanoma cell lines generated to be resistant to PLX4032 and the their associated naïve parental line
Basal expression of the WNT5A-correlated genes was also measured in experiments comparing each naïve line to a mixed reference pool containing equal amounts of 47 melanoma cell lines.
 
Contributor(s) von Euw EM, Slamon DJ, Dering J, Chen H
Citation(s) 24865425
Submission date Mar 05, 2014
Last update date Jan 23, 2019
Contact name Jamie Anastas
E-mail(s) jamie.anastas@childrens.harvard.edu, jamieanastas@gmail.com
Phone 16174298539
Organization name Boston Children's Hospital
Department Newborn Medicine
Lab Yang Shi
Street address 300 Longwood Ave
City Boston, MA
State/province United States of America
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (10)
GSM1339608 SK-MEL-28 naive vs. SK-MEL-28 Resistant
GSM1339609 M14 naive vs. M14 Resistant
GSM1339610 M288 naive vs. M288 Resistant
Relations
BioProject PRJNA240147

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55583_RAW.tar 63.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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