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Series GSE55972 Query DataSets for GSE55972
Status Public on Sep 08, 2014
Title Effect of Titanium dioxide nanoparticles on Escherichia coli K12 MG1655 genes expression
Platform organisms Escherichia coli O157:H7 str. EDL933; Escherichia coli CFT073; Escherichia coli O157:H7 str. Sakai; Escherichia coli str. K-12 substr. MG1655
Sample organism Escherichia coli str. K-12 substr. MG1655
Experiment type Expression profiling by array
Summary In the present study, we investigated the transcriptional expression patterns of the model strain E. coli exposed to titanium dioxide nanoparticles (NP-TiO2), under dark conditions by using a microarray. Expression profiles were compared to unexposed E.coli and ratio of expression were analysed.
 
Overall design Cell exposure to NP-TiO2 was conducted in 10 mM NaCl, E. coli bacterial suspension and NP-TiO2 stock suspension (or mQ water for the control) were added to the NaCl solution to obtain final concentrations of 10E7 cells/ml and 100 mg/l of TiO2 nanoparticles. The flasks were then incubated at 20°C on a dark rotary shaker for 5 h. Exposed NP-TiO2: 4 biological replicats. Control: 4 biological replicats.
 
Contributor(s) Sohm B, Pagnout C
Citation(s) 25346333
Submission date Mar 17, 2014
Last update date Dec 08, 2014
Contact name Bénédicte SOHM
E-mail(s) sohm5@univ-lorraine.fr
Phone 0033372748942
Organization name CNRS
Lab UMR 7360
Street address 8 rue du Gal Delestraint
City METZ
ZIP/Postal code 57070
Country France
 
Platforms (1)
GPL13359 Agilent-020097 E. coli Gene Expression Microarray (Probe Name version)
Samples (8)
GSM1349621 Ecoli_control_5h_rep1
GSM1349622 Ecoli_control_5h_rep2
GSM1349623 Ecoli_control_5h_rep3
Relations
BioProject PRJNA241458

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55972_RAW.tar 8.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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