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Series GSE57185 Query DataSets for GSE57185
Status Public on Mar 26, 2015
Title Growth cone localization of the mRNA encoding a chromatin regulator modulates neurite outgrowth
Organism Mus musculus
Experiment type Expression profiling by array
Summary Neurons exploit mRNA localization and local translation to spatio-temporally regulate gene expression during development. Local translation and retrograde transport of transcription factors regulate nuclear gene expression in response to signaling events at distal neuronal ends. Whether epigenetic factors could also be involved in such regulation is not known. We report that the mRNA encoding the high mobility group N5 (HMGN5) chromatin binding protein localizes to growth cones of both neuronal-like cells and of hippocampal neurons. We show that Hmgn5 3’UTR drives growth cone localization and translation of a reporter gene, and that HMGN5 can be retrogradely transported into the nucleus along neurites. Loss of HMGN5 function induces transcriptional changes and impairs neurite outgrowth while HMGN5 overexpression induces neurite outgrowth and global chromatin decompaction. Interestingly, control of both neurite outgrowth and chromatin structure is dependent on proper growth cone localization of Hmgn5 mRNA. Our results provide the first evidence that mRNA localization and local translation might serve as a mechanism to couple the dynamic neuronal outgrowth process with chromatin regulation in the nucleus.
 
Overall design N1E-115 mouse neuroblastoma cells were transfected with control siRNAs or with siRNAs against Hmgn5. They were then allowed to differentiate and extend neurites for 4h or 24h. Total RNA was then extracted and subjected to microarray analysis.
 
Contributor(s) Moretti F, Ivanek R, Pertz O
Citation(s) 25825524
Submission date Apr 30, 2014
Last update date Nov 17, 2021
Contact name DBM Bioinformatics Core Facility
Phone +41612073541
Organization name University of Basel
Department Departement of Biomedicine
Street address Hebelstrasse 20
City Basel
State/province BS
ZIP/Postal code 4053
Country Switzerland
 
Platforms (1)
GPL16570 [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
Samples (9)
GSM1376832 control siRNA 24h sample1
GSM1376833 control siRNA 24h sample2
GSM1376834 control siRNA 24h sample3
Relations
BioProject PRJNA245859

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Supplementary file Size Download File type/resource
GSE57185_RAW.tar 82.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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