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Series GSE58172 Query DataSets for GSE58172
Status Public on Jun 04, 2014
Title CGH: FN1.4_v_M92-220
Organism Glycine max
Experiment type Genome variation profiling by array
Summary Soybean fast neutron (FN) mutant lines were compared by CGH to catalog structurally variant (e.g. deletion and duplication) regions compared to the parent line (M92-220).
The CGH comparisons reveal reveal putative deletions and duplications among the mutant lines.
 
Overall design FN lines were compared through a common reference, M92-220 (this is a sub-line individual isolated from the M92-220 seed stock). Each FN line was represented by a single individual plant. The reported values show the log2 ratio of the normalized FN line hybridization signals (Cy3) over the normalized M92-220 hybridization signal (Cy5).
 
Contributor(s) Stupar RM, Stec AO, Yung-Tsi B, Anderson JE
Citation(s) 25213171, 27176220
Submission date Jun 02, 2014
Last update date May 27, 2020
Contact name Robert M Stupar
E-mail(s) stup0004@umn.edu
Organization name University of Minnesota
Department Agronomy and Plant Genetics
Street address 1991 Upper Buford Circle
City Saint Paul
State/province MN
ZIP/Postal code 55108
Country USA
 
Platforms (1)
GPL18500 Soybean 1.4 Million CGH microarray
Samples (146)
GSM1402583 CGH: FN0110332.02.02.M4_v_M92-220
GSM1402584 CGH: FN0110338.02.01.M4_v_M92-220
GSM1402585 CGH: FN0110495.02.03.M4_v_M92-220
Relations
BioProject PRJNA251560

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58172_RAW.tar 7.0 Gb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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