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Status
Public on Mar 30, 2014
Title
Soybean 1.4 Million CGH microarray
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Glycine max Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Tiling array designed from the Glycine max genome (assembly version 1.01). This genome version is deposited at DDBJ/EMBL/GenBank under the accession number ACUP01000000.
Submission date
Mar 29, 2014
Last update date
Jun 02, 2014
Contact name
Robert M Stupar
E-mail(s)
stup0004@umn.edu Organization name
University of Minnesota
Department
Agronomy and Plant Genetics
Street address
1991 Upper Buford Circle
City
Saint Paul
State/province
MN
ZIP/Postal code
55108
Country
USA
Samples (195)
GSM1359718 , GSM1359719 , GSM1359720 , GSM1359721 , GSM1359722 , GSM1359723
GSM1359724 ,
GSM1359725 ,
GSM1359726 ,
GSM1359727 ,
GSM1359728 ,
GSM1359729 ,
GSM1359730 ,
GSM1359731 ,
GSM1359732 ,
GSM1359733 ,
GSM1359734 ,
GSM1359735 ,
GSM1359736 ,
GSM1359737 ,
GSM1359738 ,
GSM1359739 ,
GSM1359740 ,
GSM1359741 ,
GSM1359742 ,
GSM1359743 ,
GSM1359744 ,
GSM1359745 ,
GSM1359746 ,
GSM1359747 ,
GSM1359748 ,
GSM1359749 ,
GSM1359750 ,
GSM1359751 ,
GSM1359752 ,
GSM1359753 ,
GSM1359754 ,
GSM1359755 ,
GSM1359756 ,
GSM1359757 ,
GSM1359758 ,
GSM1359759 ,
GSM1402583 ,
GSM1402584 ,
GSM1402585 ,
GSM1402586 ,
GSM1402587 ,
GSM1402588 ,
GSM1402589 ,
GSM1402590 ,
GSM1402591 ,
GSM1402592 ,
GSM1402593 ,
GSM1402594 ,
GSM1402595 ,
GSM1402596 ,
GSM1402597 ,
GSM1402598 ,
GSM1402599 ,
GSM1402600 ,
GSM1402601 ,
GSM1402602 ,
GSM1402603 ,
GSM1402604 ,
GSM1402605 ,
GSM1402606 ,
GSM1402607 ,
GSM1402608 ,
GSM1402609 ,
GSM1402610 ,
GSM1402611 ,
GSM1402612 ,
GSM1402613 ,
GSM1402614 ,
GSM1402615 ,
GSM1402616 ,
GSM1402617 ,
GSM1402618 ,
GSM1402619 ,
GSM1402635 ,
GSM1402636 ,
GSM1402637 ,
GSM1402638 ,
GSM1402639 ,
GSM1402640 ,
GSM1402641 ,
GSM1402642 ,
GSM1402643 ,
GSM1402644 ,
GSM1402645 ,
GSM1402646 ,
GSM1402647 ,
GSM1402648 ,
GSM1402649 ,
GSM1402650 ,
GSM1402651 ,
GSM1402652 ,
GSM1402653 ,
GSM1402654 ,
GSM1402655 ,
GSM1402656 ,
GSM1402657 ,
GSM1402658 ,
GSM1402659 ,
GSM1402660 ,
GSM1402661 ,
GSM1402662 ,
GSM1402663 ,
GSM1402664 ,
GSM1402665 ,
GSM1402666 ,
GSM1402667 ,
GSM1402668 ,
GSM1402669 ,
GSM1402670 ,
GSM1402671 ,
GSM1402672 ,
GSM1402673 ,
GSM1402674 ,
GSM1402675 ,
GSM1402676 ,
GSM1402677 ,
GSM1402678 ,
GSM1402679 ,
GSM1402680 ,
GSM1402681 ,
GSM1402682 ,
GSM1402683 ,
GSM1402684 ,
GSM1402685 ,
GSM1402686 ,
GSM1402687 ,
GSM1402688 ,
GSM1402689 ,
GSM1402690 ,
GSM1402691 ,
GSM1402692 ,
GSM1402693 ,
GSM1402694 ,
GSM1402695 ,
GSM1402696 ,
GSM1402697 ,
GSM1402698 ,
GSM1402699 ,
GSM1402700 ,
GSM1402701 ,
GSM1402702 ,
GSM1402703 ,
GSM1402704 ,
GSM1402705 ,
GSM1402706 ,
GSM1402707 ,
GSM1402711 ,
GSM1402712 ,
GSM1402713 ,
GSM1402714 ,
GSM1402715 ,
GSM1402716 ,
GSM1402717 ,
GSM1402718 ,
GSM1402719 ,
GSM1402720 ,
GSM1402721 ,
GSM1402722 ,
GSM1402723 ,
GSM1402724 ,
GSM1402725 ,
GSM1402726 ,
GSM1402727 ,
GSM1402728 ,
GSM1402729 ,
GSM1402730 ,
GSM1402731 ,
GSM1402732 ,
GSM1402733 ,
GSM1402734 ,
GSM1402735 ,
GSM1402736 ,
GSM1402737 ,
GSM1402738 ,
GSM1402739 ,
GSM1402740 ,
GSM1402741 ,
GSM1402742 ,
GSM1402743 ,
GSM1402744 ,
GSM1402745 ,
GSM1402746 ,
GSM1898742 ,
GSM1898743 ,
GSM1898744 ,
GSM1898745 ,
GSM1898746 ,
GSM1898747 ,
GSM1898748 Series (3)
GSE56351 CGH: NAM parent lines vs. Wm82-ISU-01
GSE58172 CGH: FN1.4_v_M92-220
GSE73596 CGH: Transgenic soybeans and controls
Data table header descriptions ID SEQUENCE Sequence of oligo
Chromosome Chromosomal location of oligo (Glycine max genome assembly version 1.01)
RANGE_START Chromosomal start position of oligo (Glycine max genome assembly version 1.01)
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo (Glycine max genome assembly version 1.01)
Data table ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END GM01FS000000077
GGGTTAGGAAATAATTTGGGTCTTTCATCTTTCAACAAAAAATTAAGGGA
Gm01
77
50
126
GM01FS000000672
GGGTTTAGGGTTCTTTGCCTGGGTGTGCCAGTGGCGGGAGAAAATGGAGG
Gm01
672
50
721
GM01FS000001127
TCAATGAACACGAAAAAAGTAGTCCCGTTCCCTGGTTCCGTCAACTAAAAC
Gm01
1127
51
1177
GM01FS000001825
TTTTGCGTGGGTGTTCCAGTGGCGTGAGACATTGGAGGGCAGTCATTTCT
Gm01
1825
50
1874
GM01FS000002394
TTTTTGCGTGAGTGTGCCAGTGGCGTGAGACAATGGAGGGTGGCCAAATC
Gm01
2394
50
2443
GM01FS000002852
AAAATAGTCCCGCTACCCTTTTCCGTCAACTGACACGTAAAAACAAAGCT
Gm01
2852
50
2901
GM01FS000003492
GGAAATCAACCATTTTCCATGTTTAAGTACCCATGTTTGGGTTTGTTTGCGTG
Gm01
3492
53
3544
GM01FS000004001
AGTCCCGTTCCTTGGTTCCATCAACTAACACGTCAAAATAAAGCCTAAAAA
Gm01
4001
51
4051
GM01FS000004683
GTTTGTGCCTTTGTTTCGTTAATGTTCTTGTTCATGTTTCTTGTTTCTTTCAGAC
Gm01
4683
55
4737
GM01FS000005460
GGTGGTGGTGATTATCATCAATTGGACAGATCTCAGCGCTTATTACTAGATGT
Gm01
5460
53
5512
GM01FS000007125
ATCAAGCGATCTGCTCCTAGTCAGGATCACATCATTTTCCCCCTAATGGA
Gm01
7125
50
7174
GM01FS000007868
GGGTGGCAGAACCCGACTACCGTAAAAAGCAAAAAAAGAGGTGTAGTTTG
Gm01
7868
50
7917
GM01FS000008357
TAGGGTTGCTTGACTAATTGGGTGTAGGAGTATTTTACAAATAACGGTTTAG
Gm01
8357
52
8408
GM01FS000008815
GATCAATTAGGGTGTATGGTTATATTAAAAACTTAGGGTTTATGGATACTTCAC
Gm01
8815
54
8868
GM01FS000009479
TTATTTTTACCTGGTAACTGATGCAGGAGACGTTCAAACTATGGAAAATGTGTGCCTGA
Gm01
9479
59
9537
GM01FS000009922
CTATGGAAAACGTGTGCCACGAATACCATTAATTTGTTTGACATAATTTTGAAAA
Gm01
9922
55
9976
GM01FS000010422
TTTTTTTTGTTGCTCTTATTTTGAGGTGGTTATCGATGCAACTGGTGCACAATATTT
Gm01
10422
57
10478
GM01FS000010914
AGGGTTGTGTTACTTCAATAATTAAGGATTATGGTTATTTGATAAATTAGACT
Gm01
10914
53
10966
GM01FS000011688
GTTATTTGATAAATTACACTTTAGGGTTACTTTGTTAGTTATAGTTTAGG
Gm01
11688
50
11737
GM01FS000012186
AGTCAAATACACCTGAACCCTAATTTGTCAAGTAACCCTAAACTCTAATTTG
Gm01
12186
52
12237
1404208 134250 Kbytes .Supplementary file Size Download File type/resource GPL18500_110921_Gmax_RS_CGH.ndf.gz
81.7 Mb
(ftp) (http) NDF
GPL18500_110921_Gmax_RS_CGH.pos.gz
11.4 Mb
(ftp) (http) POS
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