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Series GSE58204 Query DataSets for GSE58204
Status Public on Sep 30, 2014
Title Rat Life Cycle (RLC) Heart Gene Expression Data
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Cardiovascular disease (CVD) is the leading cause of mortality, with sex and age being strong risk factors. Mitochondria are vital for normal cardiac function, and regulation of mitochondrial structure and function may impact susceptibility to CVD. We analyzed the basal expression levels of mitochondria-related genes in the hearts of male and female untreated control rats at different ages to identify potential role of mitochondria in differential susceptibility to CVD between the sexes.
 
Overall design Hearts from 5 male and 5 female rats at three different ages (young (8-week), adult (21-week), and old (78-week)) were used for investigation of sex-related differences in expression levels of genes. At each age, rats were humanely euthanized by CO2 asphyxiation and whole hearts were removed quickly, flash frozen in liquid nitrogen, and stored at -80˚C until further investigation. The frozen hearts were individually ground into powder in liquid nitrogen using a mortar and pestle chilled on dry ice. Total RNAs were extracted from heart tissue powder and gene expression was measured using Agilent Rat Whole Genome Microarrays (4 x 44k format; Agilent Technologies, Inc.).
 
Contributor(s) Vijay V, Han T
Citation(s) 25615628
Submission date Jun 03, 2014
Last update date Dec 21, 2016
Contact name Vikrant Vijay
E-mail(s) vikrant.vijay@fda.hhs.gov
Phone 870-543-7525
Organization name US FDA National Center for Toxicological Research
Department Division of Systems Biology
Lab Personalized Medicine
Street address 3900 NCTR Road
City Jefferson
State/province AR
ZIP/Postal code 72079
Country USA
 
Platforms (1)
GPL4135 Agilent-014879 Whole Rat Genome Microarray 4x44K G4131F (Feature Number version)
Samples (30)
GSM1403223 RLC_Heart_Female_8wks_Rep1
GSM1403224 RLC_Heart_Female_8wks_Rep2
GSM1403225 RLC_Heart_Female_8wks_Rep3
Relations
BioProject PRJNA251565

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58204_75th_percentile_21_wks.txt.gz 1.5 Mb (ftp)(http) TXT
GSE58204_75th_percentile_78_wks.txt.gz 1.5 Mb (ftp)(http) TXT
GSE58204_75th_percentile_8_wks.txt.gz 1.5 Mb (ftp)(http) TXT
GSE58204_RAW.tar 266.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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