|
| Status |
Public on Jan 01, 2007 |
| Title |
Gnotobiotic mouse cecal epithelium; B.thetaiotaomicron-B. longum mono- versus bi-association, PR chow, NMRI |
| Platform organisms |
Homo sapiens; Mus musculus |
| Sample organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Laser captured cecal epithelium from gnotobiotic mice colonized with B. thetaiotaomicron or B. longum (mono-association) or B. thetaiotaomicron bi-association with B. longum. Samples were derived from 10d colonizations of NMRI mice fed a standard-chow polysaccharide rich (PR) diet.
Keywords: Germ-free vs. Mono-associations or Bi-association, in vivo
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| |
|
| Overall design |
Total RNA was prepared from laser captured cecal epithelium of 10 day associated gnotobiotic mice, double amplified, and hybridized to 430 2.0 GeneChips or to GlycoGeneChipsv1.
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| |
|
| Contributor(s) |
Sonnenburg JL, Chen CT, Gordon JI |
| Citation(s) |
17132046 |
| |
| Submission date |
Sep 19, 2006 |
| Last update date |
Feb 11, 2019 |
| Contact name |
Justin L. Sonnenburg |
| E-mail(s) |
jsonnenburg@wustl.edu
|
| Phone |
314-362-5443
|
| URL |
http://gordonlab.wustl.edu/metaview/bt
|
| Organization name |
Washington University
|
| Department |
Center for Genome Sciences
|
| Lab |
Jeffrey I. Gordon
|
| Street address |
4444 Forest Park
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63108 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
| GPL1981 |
GLYCOv1 glycogene array |
|
| Samples (16)
|
| GSM136183 |
GF NMRI mice LCM cecal epithelium (pool of 4 animals)_#9128 |
| GSM136184 |
GF NMRI mice LCM cecal epithelium (pool of 4 animals)_#9129 |
| GSM136421 |
B. thetatiotaomicron mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9130 |
| GSM136422 |
B. thetatiotaomicron mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9443 |
| GSM136423 |
B. thetatiotaomicron-B. longum bi-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9132 |
| GSM136424 |
B. thetatiotaomicron-B. longum bi-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9133 |
| GSM136425 |
B. longum mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9134 |
| GSM136426 |
B. longum mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9135 |
| GSM136433 |
GF NMRI mice LCM cecal epithelium (pool of 4 animals)_#9175 |
| GSM136434 |
GF NMRI mice LCM cecal epithelium (pool of 4 animals)_#9176 |
| GSM136435 |
B. thetatiotaomicron mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9177 |
| GSM136436 |
B. thetatiotaomicron mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9568 |
| GSM136437 |
B. thetatiotaomicron-B. longum bi-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9179 |
| GSM136438 |
B. thetatiotaomicron-B. longum bi-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9180 |
| GSM136439 |
B. longum mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9181 |
| GSM136440 |
B. longum mono-associated (10d) gnotobiotic NMRI mice LCM cecal epithelium (pool of 4 animals)_#9182 |
|
| Relations |
| BioProject |
PRJNA97281 |
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