|
| Status |
Public on Mar 18, 2007 |
| Title |
Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere |
| Platform organisms |
Pseudomonas aeruginosa; Populus sp. |
| Sample organisms |
Pseudomonas aeruginosa; Populus |
| Experiment type |
Expression profiling by array
|
| Summary |
Pseudomonas aeruginosa PAO1 contacted with and without poplar roots gene expression Poplar contacted with and without PAO1 gene expression. All samples cultured in 1 x hrp + 0.25 % sucrose
Keywords: Contact with different species
|
| |
|
| Overall design |
Strains: P. aeruginosa PAO1 WT
Medium: 1 x hrp + 0.25 % sucrose
Biofilm grown on poplar root compared to biofilm grown on glasswool
Poplar roots grown
|
| |
|
| Contributor(s) |
Wood TK, Attila C, Ueda A |
| Citation(s) |
21261818 |
| Submission date |
Sep 20, 2006 |
| Last update date |
Jul 06, 2016 |
| Contact name |
Can Attila |
| E-mail(s) |
can.attila@chemail.tamu.edu
|
| Organization name |
Texas A&M University
|
| Department |
Chemical Eng
|
| Street address |
524 Jack E. Brown Bldg.
|
| City |
College Station |
| State/province |
TX |
| ZIP/Postal code |
77843 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL84 |
[Pae_G1a] Affymetrix Pseudomonas aeruginosa Array |
| GPL4359 |
[Poplar] Affymetrix Poplar Genome Array |
|
| Samples (4)
|
| GSM136932 |
PAO1 on poplar root 48 hr |
| GSM136934 |
PAO1 on glasswool 1 x hrp + 0.25 % sucrose 48 hr biofilm cells |
| GSM136936 |
Poplar in 1 x hrp + 0.25 % sucrose no bacteria |
| GSM136938 |
Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose |
|
| Relations |
| BioProject |
PRJNA97309 |
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