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Sample GSM136932 Query DataSets for GSM136932
Status Public on Mar 18, 2007
Title PAO1 on poplar root 48 hr
Sample type RNA
 
Source name Channel 1
Organism Pseudomonas aeruginosa
Characteristics RNA extreacted from biofilm cells of P. aeruginosa PAO1 on poplar roots after 48 hours of contact
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Protocol
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description RNA extracted from biofilm cells of P. aeruginosa PAO1 on poplar roots after 48 hours of contact
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Sep 20, 2006
Last update date Mar 18, 2007
Contact name Can Attila
E-mail(s) can.attila@chemail.tamu.edu
Organization name Texas A&M University
Department Chemical Eng
Street address 524 Jack E. Brown Bldg.
City College Station
State/province TX
ZIP/Postal code 77843
Country USA
 
Platform ID GPL84
Series (1)
GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Data table header descriptions
ID_REF
PAO1 on poplar root Stat Pairs Number of perfect match probes for the probeset
PAO1 on poplar root Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF PAO1 on poplar root Stat Pairs PAO1 on poplar root Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-YEL002C_WPB1_at 16 16 0.2 A 0.67917
AFFX-YEL018W_at 16 16 0.4 A 0.795978
AFFX-YEL024W_RIP1_at 16 16 0.7 A 0.218983
AFFX-YFL039C_ACT1_at 16 16 3.1 A 0.64131
AFFX-YER148W_SPT15_at 16 16 0.5 A 0.933135
AFFX-YER022W_SRB4_at 16 16 0.1 A 0.975289
AFFX-Athal_GAPDH_at 16 16 8.1 P 0.035163
AFFX-Athal_ubq_at 16 16 2.7 A 0.926204
AFFX-Athal_actin_at 16 16 0.9 A 0.602006
AFFX-Bsubtilis_dapB_at 16 16 134.8 P 0.000266
AFFX-Bsubtilis_lys_at 16 16 12.3 P 0.014937
AFFX-Bsubtilis_pheB_at 16 16 18.8 P 0.001141
AFFX-Bsubtilis_thrC_at 16 16 86.7 P 0.001354
AFFX-Bsubtilis_trpD_at 16 16 0.4 A 0.990015
Pae_flgK_at 13 13 25.9 A 0.172724
Pae_flgL_at 13 13 1.8 A 0.980378
Pae_orfA_vioA_at 13 13 2.9 A 0.889335
Pae_orfB_at 13 13 22.8 A 0.210789
Pae_orfC_at 13 13 13.5 A 0.596617
Pae_orfD_at 13 13 9.4 A 0.569348

Total number of rows: 5900

Table truncated, full table size 199 Kbytes.




Supplementary data files not provided
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