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| Status |
Public on Oct 19, 2006 |
| Title |
E. coli MG1655 transcriptome inferred from a tiled microarray |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
These data were used to infer transcription fragments (transfrags) for the study "The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate-limiting" (Reppas et al. 2006). This study analyzes transfrags with respect to the ChIP profile of the sigma70 and the beta subunit of RNA polymerase.
Keywords: Tiled analysis of mRNA expression; ChIP-chip
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| Overall design |
RNA was isolated from duplicate cell cultures, which were also used for chromatin immunoprecipitation (ChIP) of sigma70- and RNA polymerase beta-crosslinked DNA.
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| Contributor(s) |
Reppas NB, Wade JT, Church GM, Struhl K |
| Citation(s) |
17157257 |
| |
| Submission date |
Oct 17, 2006 |
| Last update date |
Mar 17, 2012 |
| Contact name |
Nikos Reppas |
| Organization name |
Harvard University
|
| Street address |
77 Avenue Louis Pasteur
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL4458 |
Escherichia coli MG1655 382K 50-mer tiling array |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE6069 |
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate-limiting |
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| Relations |
| BioProject |
PRJNA104433 |
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