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Series GSE60839 Query DataSets for GSE60839
Status Public on Dec 01, 2014
Title miRCURY LNATM microRNA Array (7th Gen) profiling of monocyte-derived macrophages and monocyte-derived dendritic cells.
Platform organisms Homo sapiens; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Cytomegalovirus; Lymphocryptovirus; Rhadinovirus; JC polyomavirus; Human immunodeficiency virus 1; Merkel cell polyomavirus; Betapolyomavirus hominis; Betapolyomavirus macacae
Sample organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary To examine the miRNA changes that occur during macrophage and dendritic cell differentiation we used the miRCURY LNATM microRNA Array (7th Gen) to profile monocyte-derived macrophages and monocyte-derived dendritic cells. Of the 2046 probes present on the assay, we detected expression of ~400 (20%) miRNAs across all samples.
 
Overall design CD14+ monocytes were isolated from the peripheral blood of 4 normal, healthy volunteers and differentiated into macrophages and dendritic cells in vitro. Total RNA was isolated from these cells at 0, 1, 4, 12, 24, 72, 120, and 168 hours of culture. RNA was profiled using the Qiagen miRCURY LNATM microRNA Hi-Power Labelling Kit and miRCURY LNATM microRNA Array (7th Gen).
 
Contributor(s) Fordham JB, Naqvi AR, Nares S
Citation(s) 25601927, 25990241
Submission date Aug 27, 2014
Last update date Jul 30, 2019
Contact name Jezrom Bokcaerin Self-Fordham
E-mail(s) jez.fordham@gmail.com
Phone 7735247565
Organization name UIC
Department Periodontics
Lab 461
Street address 801 S Paulina
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platforms (1)
GPL19128 Exiqon miRCURY LNA microRNA array; 7th generation - hsa, mmu & rno (miRBase 18.0)
Samples (90)
GSM1489764 Monocyte Donor 5 [1 Hy3TM]
GSM1489765 Macrophage Donor 5 1 hour [2 Hy3TM]
GSM1489766 Macrophage Donor 5 4 hour [3 Hy3TM]
Relations
BioProject PRJNA259653

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60839_ExpAnalysis1.xlsx.gz 220.1 Kb (ftp)(http) XLSX
GSE60839_ExpAnalysis2.xlsx.gz 223.1 Kb (ftp)(http) XLSX
GSE60839_ExpAnalysis3.xlsx.gz 82.5 Kb (ftp)(http) XLSX
GSE60839_ExpAnalysis4.xlsx.gz 82.4 Kb (ftp)(http) XLSX
GSE60839_RAW.tar 120.5 Mb (http)(custom) TAR (of TXT)
GSE60839_normalized_signal.txt.gz 382.7 Kb (ftp)(http) TXT
Processed data are available on Series record

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