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| Status |
Public on Dec 30, 2015 |
| Title |
Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To dissect the molecular mechanisms of resistance mediated by Xa39,the transcriptome profiling of a rice line carrying Xa39 and its parents at the early stage of Xoo infection were investigated.
A rice introgression line H471 carrying Xa39 exhibited a typical local hypersensitive response phenotype, accompanied by programmed cell death after inoculation with the Xoo Philippines’ race 9b.Our results indicated there might be cross-talk between the Xa39-mediated signal transduction cascades and the GA/BR signaling pathway, and the defense mechanism was related to diverse kinases, transcription factors, post-translational regulation, and R genes.
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| Overall design |
Transcriptome profiling of H471 and its parents (HHZ and P28) at 1 and 2 days post-inoculation was performed using RNA sequencing.
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| Contributor(s) |
Zhang F, Huang L, Zhou Y |
| Citation(s) |
25765449 |
| |
| Submission date |
Oct 20, 2014 |
| Last update date |
Jun 17, 2019 |
| Contact name |
Fan Zhang |
| Organization name |
CAAS
|
| Street address |
12 South Zhong-Guan-Cun St.
|
| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100081 |
| Country |
China |
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| Platforms (1) |
| GPL13160 |
Illumina HiSeq 2000 (Oryza sativa) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA264278 |
| SRA |
SRP049040 |
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