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Series GSE63301 Query DataSets for GSE63301
Status Public on Dec 12, 2014
Title Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase
Organism Schizosaccharomyces pombe
Experiment type Expression profiling by array
Genome binding/occupancy profiling by array
Summary Gene expression profiling of S. pombe set1/COMPASS/H3K4 mutants, atf1 and set1 atf1 deletion mutants, set1 clr3 deletion mutants; ChIP-chip tiling microarray profiling of S. pombe Set1, Atf1, H3K4me3 in wt/atf1 deletion mutants, H3K9me2 in wt/set1 clr3 deletion mutants
Overall design Custom Agilent 60mer microarrays were used to assay gene expression in set1/COMPASS mutants in combination with atf1 and clr3 mutants, and to profile genome-wide binding of Set1, Atf1, H3K4me3 and H3K9me2 in S. pombe cells (two-color mutant vs. wildtype, ChIP vs. input experiments).
Contributor(s) Cam HP, Lorenz DR
Citation(s) 25497836
Submission date Nov 14, 2014
Last update date Sep 19, 2016
Contact name Hugh P Cam
Phone 6175526851
Organization name Boston College
Department Biology
Street address Higgins Hall Room 355, 140 Commonwealth Avenue
City Chestnut Hill
State/province MA
ZIP/Postal code 02467
Country USA
Platforms (1)
GPL6503 Agilent-016010 S.pombe 4X44K_v3 (Feature Number version)
Samples (40)
GSM1545277 set1D_1
GSM1545278 set1D_2
GSM1545279 ash2D_1
BioProject PRJNA267234

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63301_RAW.tar 486.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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