NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE63740 Query DataSets for GSE63740
Status Public on Dec 02, 2014
Title Persistence of furan-induced epigenetic aberrations in the livers of Fisher 344 rats
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Furan is a heterocyclic organic compound produced in the chemical manufacturing industry and also found in a broad range of food products, including infant formulas and baby foods. Previous reports have indicated that the adverse biological effects of furan, including its liver tumorigenicity, may be associated with epigenetic abnormalities. In the present study we investigated the persistence of epigenetic alterations in rat liver. Male Fisher 344 (F344) rats were treated by gavage 5 days per week with 8 mg furan/kg body weight (bw)/day for 90 days. After the last treatment, rats were divided randomly into four groups; one group of rats was sacrificed 24 hours after the last treatment, while other groups were maintained without further furan treatment for an additional 90, 180, or 360 days. Treatment with furan for 90 days resulted in alterations in histone lysine methylation and acetylation, oxidative damage to DNA, and changes in the gene expression in the livers. A majority of these furan-induced molecular changes was transient and disappeared after the cessation of furan treatment. In contrast, histone H3 lysine 9, H3 lysine 27, and H3 lysine 56 showed a sustained and time-depended decrease in acetylation, which was associated with formation of heterochromatin and altered gene expression. These results indicate that furan-induced adverse effects may be mechanistically related to sustained changes in histone lysine acetylation that compromise the ability of cells to maintain and control properly the expression of genetic information.
 
Overall design Male Fisher 344 (F344) rats were treated by gavage 5 days per week with 8 mg furan/kg body weight (bw)/day for 90 days and gene expression profiles in the livers from four control and four Furan-treated rats were investigated.
 
Contributor(s) Tryndyak V, de Conti A, Han T, Fuscoe JC, Beland FA, Doerge DR, Pogribny IP
Citation(s) 25539665
Submission date Dec 01, 2014
Last update date Jan 22, 2015
Contact name Volodymyr Tryndyak
E-mail(s) volodymyr.tryndyak@fda.hhs.gov
Phone 870-543-7545
Organization name US-FDA National Center for Toxicological Research
Department Division of Biochemical Toxicology
Street address 3900 NCTR Rd
City Jefferson
ZIP/Postal code 72079
Country USA
 
Platforms (1)
GPL14797 Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version)
Samples (8)
GSM1556384 Male_liver_control_replicate 1
GSM1556385 Male_liver_control_replicate 2
GSM1556386 Male_liver_control_replicate 3
Relations
BioProject PRJNA268953

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63740_RAW.tar 98.1 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap