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Status
Public on Oct 27, 2011
Title
Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SurePrint G3 Rat GE 8x60K Microarray
Submission date
Oct 27, 2011
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (870)
GSM842278 , GSM842279 , GSM842280 , GSM842281 , GSM842282 , GSM842283
GSM842284 ,
GSM842285 ,
GSM842286 ,
GSM842287 ,
GSM842288 ,
GSM842289 ,
GSM851109 ,
GSM851110 ,
GSM851111 ,
GSM851112 ,
GSM851113 ,
GSM851114 ,
GSM851115 ,
GSM851116 ,
GSM899749 ,
GSM899750 ,
GSM899751 ,
GSM899752 ,
GSM899753 ,
GSM899754 ,
GSM899755 ,
GSM899756 ,
GSM899757 ,
GSM899758 ,
GSM899759 ,
GSM899760 ,
GSM899761 ,
GSM899762 ,
GSM899763 ,
GSM899764 ,
GSM916554 ,
GSM916555 ,
GSM982856 ,
GSM982857 ,
GSM982858 ,
GSM982859 ,
GSM982860 ,
GSM982861 ,
GSM982862 ,
GSM982863 ,
GSM982864 ,
GSM982865 ,
GSM982866 ,
GSM982867 ,
GSM1041005 ,
GSM1041006 ,
GSM1041007 ,
GSM1041008 ,
GSM1041009 ,
GSM1041010 ,
GSM1041011 ,
GSM1041012 ,
GSM1041013 ,
GSM1041014 ,
GSM1049637 ,
GSM1049638 ,
GSM1049639 ,
GSM1049640 ,
GSM1049641 ,
GSM1049642 ,
GSM1049643 ,
GSM1049644 ,
GSM1129254 ,
GSM1129255 ,
GSM1129256 ,
GSM1129257 ,
GSM1129258 ,
GSM1129259 ,
GSM1129260 ,
GSM1129261 ,
GSM1130128 ,
GSM1130129 ,
GSM1130130 ,
GSM1130131 ,
GSM1130132 ,
GSM1130133 ,
GSM1305761 ,
GSM1305762 ,
GSM1305763 ,
GSM1305764 ,
GSM1305765 ,
GSM1305766 ,
GSM1305767 ,
GSM1305768 ,
GSM1305769 ,
GSM1305770 ,
GSM1305771 ,
GSM1305772 ,
GSM1305773 ,
GSM1305774 ,
GSM1305775 ,
GSM1305776 ,
GSM1334889 ,
GSM1334890 ,
GSM1334891 ,
GSM1334892 ,
GSM1334893 ,
GSM1334894 ,
GSM1334895 ,
GSM1334896 ,
GSM1372828 ,
GSM1372829 ,
GSM1372830 ,
GSM1372831 ,
GSM1372832 ,
GSM1372833 ,
GSM1372834 ,
GSM1372835 ,
GSM1372836 ,
GSM1372837 ,
GSM1372838 ,
GSM1372839 ,
GSM1372840 ,
GSM1372841 ,
GSM1372842 ,
GSM1372843 ,
GSM1373819 ,
GSM1373820 ,
GSM1373821 ,
GSM1373822 ,
GSM1373823 ,
GSM1373824 ,
GSM1373825 ,
GSM1373826 ,
GSM1421228 ,
GSM1421229 ,
GSM1421230 ,
GSM1421231 ,
GSM1421232 ,
GSM1421233 ,
GSM1421234 ,
GSM1421235 ,
GSM1421236 ,
GSM1421237 ,
GSM1421238 ,
GSM1421239 ,
GSM1421240 ,
GSM1421241 ,
GSM1421242 ,
GSM1421243 ,
GSM1421244 ,
GSM1421245 ,
GSM1421246 ,
GSM1421247 ,
GSM1421248 ,
GSM1421249 ,
GSM1421250 ,
GSM1421251 ,
GSM1518689 ,
GSM1518690 ,
GSM1518691 ,
GSM1548080 ,
GSM1548081 ,
GSM1548082 ,
GSM1548083 ,
GSM1548084 ,
GSM1548085 ,
GSM1548086 ,
GSM1548087 ,
GSM1548088 ,
GSM1548089 ,
GSM1548090 ,
GSM1548091 ,
GSM1548092 ,
GSM1548093 ,
GSM1548094 ,
GSM1548095 ,
GSM1548096 ,
GSM1548097 ,
GSM1548098 ,
GSM1548099 ,
GSM1548100 ,
GSM1548101 ,
GSM1548102 ,
GSM1548103 ,
GSM1548104 ,
GSM1548105 ,
GSM1548106 ,
GSM1548107 ,
GSM1548108 ,
GSM1548109 ,
GSM1548110 ,
GSM1548111 ,
GSM1548112 ,
GSM1548113 ,
GSM1548114 ,
GSM1548115 ,
GSM1548116 ,
GSM1548117 ,
GSM1548118 ,
GSM1548119 ,
GSM1552041 ,
GSM1552042 ,
GSM1552043 ,
GSM1552044 ,
GSM1552045 ,
GSM1552046 ,
GSM1552047 ,
GSM1552048 ,
GSM1554686 ,
GSM1554687 ,
GSM1554688 ,
GSM1554689 ,
GSM1554690 ,
GSM1554691 ,
GSM1554692 ,
GSM1554693 ,
GSM1554694 ,
GSM1554695 ,
GSM1554696 ,
GSM1554697 ,
GSM1554698 ,
GSM1554699 ,
GSM1554700 ,
GSM1554701 ,
GSM1554702 ,
GSM1554703 ,
GSM1554704 ,
GSM1554705 ,
GSM1554706 ,
GSM1554707 ,
GSM1554708 ,
GSM1554709 ,
GSM1556384 ,
GSM1556385 ,
GSM1556386 ,
GSM1556387 ,
GSM1556388 ,
GSM1556389 ,
GSM1556390 ,
GSM1556391 ,
GSM1656751 ,
GSM1656752 ,
GSM1656753 ,
GSM1656754 ,
GSM1656755 ,
GSM1656756 ,
GSM1656757 ,
GSM1656758 ,
GSM1656999 ,
GSM1657000 ,
GSM1657001 ,
GSM1657002 ,
GSM1657003 ,
GSM1657004 ,
GSM1657005 ,
GSM1657006 ,
GSM1657007 ,
GSM1657008 ,
GSM1657009 ,
GSM1657010 ,
GSM1657011 ,
GSM1824014 ,
GSM1824015 ,
GSM1824016 ,
GSM1824017 ,
GSM1824018 ,
GSM1824019 ,
GSM1824020 ,
GSM1824021 ,
GSM1831595 ,
GSM1831596 ,
GSM1831597 ,
GSM1831598 ,
GSM1831599 ,
GSM1916384 ,
GSM1916385 ,
GSM1916386 ,
GSM1916387 ,
GSM1916388 ,
GSM1916389 ,
GSM1916390 ,
GSM1916391 ,
GSM1916392 ,
GSM1916393 ,
GSM1916394 ,
GSM1916395 ,
GSM1916396 ,
GSM1916397 ,
GSM1916398 ,
GSM1916399 ,
GSM1916400 ,
GSM1916401 ,
GSM1916402 ,
GSM1916403 ,
GSM2085994 ,
GSM2085995 ,
GSM2085996 ,
GSM2085997 ,
GSM2087314 ,
GSM2087315 ,
GSM2087316 ,
GSM2125330 ,
GSM2125331 ,
GSM2125332 ,
GSM2125333 ,
GSM2125334 ,
GSM2125335 ,
GSM2125336 ,
GSM2125337 ,
GSM2125338 ,
GSM2125339 ,
GSM2125340 ,
GSM2125341 ,
GSM2125342 ,
GSM2125343 ,
GSM2125344 ,
GSM2125345 ,
GSM2125346 ,
GSM2125347 ,
GSM2125348 ,
GSM2125349 ,
GSM2125350 ,
GSM2125351 ,
GSM2125352 ,
GSM2125353 ,
GSM2125354 ,
GSM2125355 ,
GSM2125356 ,
GSM2125357 ,
GSM2125358 ,
GSM2125359 ,
GSM2125360 ,
GSM2125361 ,
GSM2125362 ,
GSM2125363 ,
GSM2125364 ,
GSM2125365 ,
GSM2125366 ,
GSM2125367 ,
GSM2125368 ,
GSM2125369 ,
GSM2125370 ,
GSM2125371 ,
GSM2125372 ,
GSM2125373 ,
GSM2125374 ,
GSM2125375 ,
GSM2125376 ,
GSM2125377 ,
GSM2139119 ,
GSM2139120 ,
GSM2139121 ,
GSM2139122 ,
GSM2139123 ,
GSM2139124 ,
GSM2139125 ,
GSM2139126 ,
GSM2224400 ,
GSM2224401 ,
GSM2224402 ,
GSM2224403 ,
GSM2224404 ,
GSM2224405 ,
GSM2224406 ,
GSM2224407 ,
GSM2224408 ,
GSM2224409 ,
GSM2224410 ,
GSM2224411 ,
GSM2224412 ,
GSM2224413 ,
GSM2322267 ,
GSM2322268 ,
GSM2322269 ,
GSM2322270 ,
GSM2322271 ,
GSM2322272 ,
GSM2322273 ,
GSM2322274 ,
GSM2322275 ,
GSM2322276 ,
GSM2322277 ,
GSM2322278 ,
GSM2322279 ,
GSM2322280 ,
GSM2322281 ,
GSM2322282 ,
GSM2339988 ,
GSM2339989 ,
GSM2339990 ,
GSM2339991 ,
GSM2339992 ,
GSM2339993 ,
GSM2357639 ,
GSM2357640 ,
GSM2357641 ,
GSM2357642 ,
GSM2357643 ,
GSM2357644 ,
GSM2357645 ,
GSM2357646 ,
GSM2357647 ,
GSM2357648 ,
GSM2357649 ,
GSM2357650 ,
GSM2357651 ,
GSM2357652 ,
GSM2357653 ,
GSM2357654 ,
GSM2357655 ,
GSM2357656 ,
GSM2357657 ,
GSM2357658 ,
GSM2357659 ,
GSM2357660 ,
GSM2357661 ,
GSM2357662 ,
GSM2365934 ,
GSM2365935 ,
GSM2365936 ,
GSM2365937 ,
GSM2365938 ,
GSM2365939 ,
GSM2365940 ,
GSM2365941 ,
GSM2458753 ,
GSM2458754 ,
GSM2478963 ,
GSM2478964 ,
GSM2478965 ,
GSM2478966 ,
GSM2478967 ,
GSM2478968 ,
GSM2478969 ,
GSM2478970 ,
GSM2478971 ,
GSM2514759 ,
GSM2514760 ,
GSM2514761 ,
GSM2514762 ,
GSM2514763 ,
GSM2514764 ,
GSM2606857 ,
GSM2606858 ,
GSM2606860 ,
GSM2606863 ,
GSM2606864 ,
GSM2606866 ,
GSM2606868 ,
GSM2606869 ,
GSM2667540 ,
GSM2667541 ,
GSM2667542 ,
GSM2667543 ,
GSM2667544 ,
GSM2667545 ,
GSM2667546 ,
GSM2667547 ,
GSM2667548 ,
GSM2667549 ,
GSM2667550 ,
GSM2667551 ,
GSM2667552 ,
GSM2667553 ,
GSM2667554 ,
GSM2667555 ,
GSM2667556 ,
GSM2667557 ,
GSM2667558 ,
GSM2667559 ,
GSM2667560 ,
GSM2667561 ,
GSM2667562 ,
GSM2667563 ,
GSM2667564 ,
GSM2667565 ,
GSM2667566 ,
GSM2667567 ,
GSM2667568 ,
GSM2667569 ,
GSM2667570 ,
GSM2667571 ,
GSM2667572 ,
GSM2667573 ,
GSM2667574 ,
GSM2667575 ,
GSM2667576 ,
GSM2667577 ,
GSM2667578 ,
GSM2667579 ,
GSM2667580 ,
GSM2667581 ,
GSM2667582 ,
GSM2667583 ,
GSM2667584 ,
GSM2667585 ,
GSM2667586 ,
GSM2667587 ,
GSM2667588 ,
GSM2667589 ,
GSM2679590 ,
GSM2679591 ,
GSM2679592 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (58)
GSE34136 Influence of intrauterine low protein diet on ductal morphogenesis of the rat mammary gland.
GSE34565 Male-dominant activation of rat renal organic anion transporter 1 (Oat1) and 3 (Oat3) expression by transcription factor BCL6
GSE36722 Genomic transcriptional profiling identifies candidates genes for successful aging
GSE37351 Apoptosis induction in rat mammary tumor cells by repression of Pla2g4c expression.
GSE39980 Effect of zonisamide co-administration with levodopa on global gene expression in the striata of rats with Parkinson’s disease
GSE40937 ARF6 bi-directionally regulates the dendritic spine formation depending on neuronal maturation and activity
GSE42497 Genome wide profiling of FOXE1 binding sites in PCCL3 rat cells
GSE42767 Investigation of endothelial cell gene dysregulation in early pulmonary arterial hypertension disease model
GSE46367 Transcriptional profiles in rat hair follicles after single wave blasting impact
GSE46436 Expression data from neonatal rat ovaries following LPS exposure
GSE54005 Dextran sodium sulfate treatment of wild type and Pirc rats alters colonic normal tissue gene expression
GSE54036 Effects of dextran sodium sulfate on normal colonic tissue and tumors in wild type and Apc-Pirc/+ rats.
GSE55369 Analysis of gene expression changes in amyloid-beta (ADDL) and CAT-SKL antioxidant treated primary rat neuronal cells
GSE57005 EWAT transcriptomic analysis in male rat offspring of HF-fed dams treated with GSPE or vehicle during pregnancy and lactation
GSE57057 Human hepatocytes support the hypertrophic but not the hyperplastic response to the murine nongenotoxic hepatocarcinogen sodium phenobarbital in an in vivo study using a chimeric mouse with humanized liver [Rat Liver Experiments]
GSE57058 Human hepatocytes support the hypertrophic but not the hyperplastic response to the murine nongenotoxic hepatocarcinogen sodium phenobarbital in an in vivo study using a chimeric mouse with humanized liver
GSE58875 Influence of dietary sucrose and copper content in a rat model of non-alcoholic fatty-liver disease
GSE62028 Differences in gene expression between fast and slow muscle or between normal and denervated slow muscles
GSE63401 Beyond acid suppression: Novel therapeutic targets for gastro-esophageal reflux disease based on a murine model (esophageal tissue)
GSE63402 Beyond acid suppression: Novel therapeutic targets for gastro-esophageal reflux disease based on a murine model (whole blood)
GSE63403 Beyond acid suppression: Novel therapeutic targets for gastro-esophageal reflux disease based on a murine model
GSE63650 Aging-associated inflammatory and oxidative changes in the rat urinary bladder and dorsal root ganglia - preventive effect of caloric restriction [bladder]
GSE63651 Aging-associated inflammatory and oxidative changes in the rat urinary bladder and dorsal root ganglia - preventive effect of caloric restriction [L6 dorsal root ganglia]
GSE63652 Aging-associated inflammatory and oxidative changes in the rat urinary bladder and dorsal root ganglia - preventive effect of caloric restriction
GSE63740 Persistence of furan-induced epigenetic aberrations in the livers of Fisher 344 rats
GSE67830 Spinal gene expression signature in male wistar rats exposed to repeated psychological stress
GSE67832 Spinal cord of male wistar rats exposed to repeated psychological stress
GSE67836 Gene expression profile in rat frontal cortex during the secondary phase of trauma injury
GSE70950 Cocoa polyphenols and fiber modify colonic gene expression in rats
GSE71259 FRT thyroid cells: 2D monolayers vs. 3D follicles
GSE74288 Gene expression in the mesenteric arteries of SHR and SHRSP compared with WKYs treated with 2K1C or 1K1C, or without operation for 3 weeks at 6 weeks of age
GSE74293 Gene expression in tissues of SHR and SHRSP compared with WKYs treated with 2K1C or 1K1C, or without operation for 3 weeks at 6 weeks of age
GSE79114 Effects of muscle regeneration after injury on overloading-induced hypertrophy
GSE79176 Effect of polyphosphates on osteoblast mineralization
GSE80371 Comprehensive assessment of shockwave intensity: transcriptomic biomarker discovery for primary blast-induced mild traumatic brain injury (mTBI) using the mammalian hair follicle
GSE80967 Genome-wide characterization of CREB-dependent transcriptional programs in astrocytes
GSE83953 Transcriptional signature in rat colonocytes in response to a high protein diet
GSE87099 CD8αα+MHC-II+ Cell with Capacity to Terminate Autoimmune Inflammation Is A Novel Antigen-Presenting NK-like cell in Rats
GSE87762 Gene expression analysis of hyper active mutant SPORTS rat [brain]
GSE88854 Gene expression analysis of hyper active mutant SPORTS rat
GSE89028 Genome wide analysis of rat renal gene expression at two different time points during hyperoxaluria development
GSE89321 The estrogenic activity of triclosan
GSE93609 Gene expressions in rat intracranial aneurysms
GSE94590 Sox2-dependent fibronectin fibrillogenesis controls directional collective migration of Schwann cells
GSE95475 Gene expression analysis in rat liver after exposure to pregnenolone-16α-carbonitrile
GSE98636 Gene expression change by miR-17-92 in the dorsal root ganglion
GSE99997 TiO2-induced gene expression profiles in rat lung: a subacute inhalation study.
GSE100366 Identification of candidate genes for generalized tonic–clonic seizures in Noda Epileptic Rat
GSE102071 A diet enriched with low or high molecular weight oat beta-glucans on blood inflammatory and oxidative stress status in rats with LPS-induced enteritis
GSE102217 The effect of obestatin contained in the breast milk on the structural and functional development of the offspring in the early postnatal period
GSE103572 Discovering the process of bladder healing as the milestone for its regeneration
GSE104164 Wnt-signaling pathways are dysregulated in female cerebellum following an early methyl donor deficiency in a rat nutritional model
GSE111941 Hydroxyurea protects hippocampal neurons against oxidative, metabolic and excitotoxic stress, and improves spatial memory in a mouse model of Alzheimer’s disease (Rat)
GSE111943 Hydroxyurea attenuates oxidative, metabolic, and excitotoxic stress in rat hippocampal neurons and improves spatial memory in a mouse model of Alzheimer’s disease
GSE131435 Hippocampus-Cerebellum Axis Specific Transcriptomic Stratification to Discriminate Mild from Moderate TBI
GSE146051 131I exposured young and adult rat thyroid
GSE146739 mRNA expression of spinal dorsal horn in oxaliplatin-treated rats
GSE243996 Assessment of Diet and Stress Effects on Ocular Vulnerability in Rodent Models of Traumatic Brain Insults using a Multi-Omics Approach
Relations Alternative to
GPL15084 (Probe Name version)
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
192
328
GE_BrightCorner
GE_BrightCorner
pos
2
192
326
DarkCorner
DarkCorner
pos
3
192
324
DarkCorner
DarkCorner
pos
4
192
322
A_44_P133119
A_44_P133119
FALSE
NM_001106008
NM_001106008 289657
Tbc1d19
TBC1 domain family, member 19
Rn.46324
ENSRNOT00000004030
ref|NM_001106008|ens|ENSRNOT00000004030|gb|BC166575|gb|XM_214048
chr14:61846306-61846247
rn|14q11
Rattus norvegicus TBC1 domain family, member 19 (Tbc1d19), mRNA [NM_001106008]
GO:0005097(Rab GTPase activator activity)|GO:0005622(intracellular)
AGCTACAGATCAACTCTTGCTTTTATGGGATAGAATCCTAGGATACAACTCTCTGGAAAT
5
192
320
A_44_P1028743
A_44_P1028743
FALSE
NM_001109304
NM_001109304 501121
Cfc1
cripto, FRL-1, cryptic family 1
Rn.47635
ENSRNOT00000066284
ref|NM_001109304|ens|ENSRNOT00000066284|gb|XM_343553
chr9:33287035-33287094
rn|9q21
Rattus norvegicus cripto, FRL-1, cryptic family 1 (Cfc1), mRNA [NM_001109304]
GO:0001889(liver development)|GO:0001947(heart looping)|GO:0003007(heart morphogenesis)|GO:0007368(determination of left/right symmetry)|GO:0007492(endoderm development)|GO:0009791(post-embryonic development)|GO:0009952(anterior/posterior pattern formation)|GO:0030509(BMP signaling pathway)|GO:0048536(spleen development)|GO:0048546(digestive tract morphogenesis)|GO:0048856(anatomical structure development)|GO:0060070(canonical Wnt receptor signaling pathway)|GO:0060413(atrial septum morphogenesis)|GO:0060460(left lung morphogenesis)|GO:0060541(respiratory system development)
TGCTTCAGTGTTGAATGCTGTAAATGACCGAATGGCTGAAATATGCTGGATCCTCGTGCT
6
192
318
A_64_P085072
A_64_P085072
FALSE
NM_001106395
NM_001106395 294515
Foxo3
forkhead box O3
Rn.24593
ENSRNOT00000000327
ref|NM_001106395|ens|ENSRNOT00000000327|tc|TC614615
chr20:46171848-46171789
rn|20q13
Rattus norvegicus forkhead box O3 (Foxo3), mRNA [NM_001106395]
GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0001542(ovulation from ovarian follicle)|GO:0001544(initiation of primordial ovarian follicle growth)|GO:0001547(antral ovarian follicle growth)|GO:0001556(oocyte maturation)|GO:0003677(DNA binding)|GO:0003690(double-stranded DNA binding)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0003705(sequence-specific enhancer binding RNA polymerase II transcription factor activity)|GO:0005624(membrane fraction)|GO:0005634(nucleus)|GO:0005667(transcription factor complex)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0006351(transcription, DNA-dependent)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0006915(apoptosis)|GO:0006917(induction of apoptosis)|GO:0006974(response to DNA damage stimulus)|GO:0007389(pattern specification process)|GO:0008134(transcription factor binding)|GO:0008286(insulin receptor signaling pathway)|GO:0008301(DNA bending activity)|GO:0009790(embryo development)|GO:0009888(tissue development)|GO:0019901(protein kinase binding)|GO:0030330(DNA damage response, signal transduction by p53 class mediator)|GO:0042127(regulation of cell proliferation)|GO:0042593(glucose homeostasis)|GO:0043565(sequence-specific DNA binding)|GO:0045648(positive regulation of erythrocyte differentiation)|GO:0045893(positive regulation of transcription, DNA-dependent)|GO:0045944(positive regulation of transcription from RNA polymerase II promoter)|GO:0051090(regulation of sequence-specific DNA binding transcription factor activity)
TTAAAAAGCAGAAGGAAGGTGTTGTGTCAGTTCCCAGTCTGAGCTTTTGAGCCTGTGGAA
7
192
316
A_64_P215165
A_64_P215165
FALSE
NM_001108290
NM_001108290 360600
Spag9
sperm associated antigen 9
Rn.24583
ENSRNOT00000055623
ref|NM_001108290|ens|ENSRNOT00000055623|ens|ENSRNOT00000003777|ens|ENSRNOT00000055627
chr10:82744207-82744266
rn|10q26
Rattus norvegicus sperm associated antigen 9 (Spag9), mRNA [NM_001108290]
GO:0000187(activation of MAPK activity)|GO:0005737(cytoplasm)|GO:0007257(activation of JUN kinase activity)|GO:0008432(JUN kinase binding)|GO:0019894(kinesin binding)|GO:0030335(positive regulation of cell migration)|GO:0042147(retrograde transport, endosome to Golgi)|GO:0043410(positive regulation of MAPKKK cascade)|GO:0043548(phosphatidylinositol 3-kinase binding)|GO:0045666(positive regulation of neuron differentiation)|GO:0048273(mitogen-activated protein kinase p38 binding)|GO:0048471(perinuclear region of cytoplasm)|GO:0051146(striated muscle cell differentiation)|GO:0051260(protein homooligomerization)|GO:0090074(negative regulation of protein homodimerization activity)
AGATGCATGACCGTGGTGCATGACAAAGTCTGGTGTGGCTATAGGAACAAAATCTATGTG
8
192
314
A_64_P030861
A_64_P030861
FALSE
chr3:112586074-112586133
rn|3q36
GAAGACATGCACCACTGTTGCCTTCACACAGGTTAACTCAGAAGGCAAGGGTGCTTTGCC
9
192
312
A_43_P16664
A_43_P16664
FALSE
NM_001009630
NM_001009630 288704
RGD1311899
similar to RIKEN cDNA 2210016L21 gene
Rn.143995
ENSRNOT00000050782
ref|NM_001009630|ens|ENSRNOT00000050782|gb|FQ227447|gb|FQ213037
chr12:42946525-42946466
rn|12q16
Rattus norvegicus similar to RIKEN cDNA 2210016L21 gene (RGD1311899), mRNA [NM_001009630]
TATTCTCCAGGAGTCAGCCATACACTGCCCTGCCAAGGTCGAGAAGGAGGCCGAGAAGAA
10
192
310
A_44_P367586
A_44_P367586
FALSE
NM_001000558
NM_001000558 365885
Olr390
olfactory receptor 390
Rn.142589
ENSRNOT00000023742
ref|NM_001000558|ens|ENSRNOT00000023742|tc|NP1479264|gb|XM_345259
chr2:192189405-192189346
rn|2q34
Rattus norvegicus olfactory receptor 390 (Olr390), mRNA [NM_001000558]
GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004984(olfactory receptor activity)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0016021(integral to membrane)|GO:0050911(detection of chemical stimulus involved in sensory perception of smell)
CCTGGCTCTGTGGCTTAGTGAATTCTGTGACTCACACAACATTGGCAACCACACTCACTC
11
192
308
A_44_P544340
A_44_P544340
FALSE
NM_001034939
NM_001034939 362813
Obfc2b
oligonucleotide/oligosaccharide-binding fold containing 2B
Rn.23934
ENSRNOT00000031362
ref|NM_001034939|ens|ENSRNOT00000031362|gb|FQ219805|gb|BC104710
chr7:1697676-1697530
rn|7q11
Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 2B (Obfc2b), mRNA [NM_001034939]
GO:0000724(double-strand break repair via homologous recombination)|GO:0003677(DNA binding)|GO:0003697(single-stranded DNA binding)|GO:0005634(nucleus)|GO:0006281(DNA repair)|GO:0006974(response to DNA damage stimulus)|GO:0010212(response to ionizing radiation)|GO:0031576(G2/M transition checkpoint)|GO:0070876(SOSS complex)
ATTATCCGACTCACCAAAGGGTACGCCTCAGTGTTCAAAGGTTGTCTGACACTATACACT
12
192
306
A_64_P100629
A_64_P100629
FALSE
NM_001000376
NM_001000376 296037
Olr783
olfactory receptor 783
Rn.142748
ENSRNOT00000047208
ref|NM_001000376|ens|ENSRNOT00000047208|tc|NP1479362|gb|XM_230423
chr3:97584012-97583953
rn|3q34
Rattus norvegicus olfactory receptor 783 (Olr783), mRNA [NM_001000376]
GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004984(olfactory receptor activity)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0016021(integral to membrane)|GO:0050911(detection of chemical stimulus involved in sensory perception of smell)
TTAGGAATAAAGAGATGAAGGTAGCAATGAGAAGACTATGCAGTCAGTTCGTTAATTACA
13
192
304
A_44_P248235
A_44_P248235
FALSE
NM_001106048
NM_001106048 290361
Dok2
docking protein 2
Rn.126595
ENSRNOT00000018725
ref|NM_001106048|ens|ENSRNOT00000018725|gb|XM_224344
chr15:51173568-51173627
rn|15p11
Rattus norvegicus docking protein 2 (Dok2), mRNA [NM_001106048]
GO:0005057(receptor signaling protein activity)|GO:0005068(transmembrane receptor protein tyrosine kinase adaptor activity)|GO:0005158(insulin receptor binding)|GO:0007169(transmembrane receptor protein tyrosine kinase signaling pathway)|GO:0007265(Ras protein signal transduction)|GO:0042802(identical protein binding)
CTCTGAGGGGGAATATGCTGTGCCTTTTGACACAGTGGTTCACTCCCTGAAGAAGAGCTT
14
192
302
A_64_P134485
A_64_P134485
FALSE
chr4:114950000-114949941
rn|4q34
TCAATGGACAAAATAGAATCTCCGATATTGTGAAGGTGACACTGACTCCTGAGGAGGAGG
15
192
300
A_42_P581135
A_42_P581135
FALSE
NM_001017454
NM_001017454 307833
RGD1307799
similar to RIKEN cDNA 2400003C14
Rn.2250
ENSRNOT00000020365
ref|NM_001017454|ens|ENSRNOT00000020365|gb|BC092631|tc|TC583044
chr19:39554368-39554309
rn|19q12
Rattus norvegicus similar to RIKEN cDNA 2400003C14 (RGD1307799), mRNA [NM_001017454]
GO:0005793(ER-Golgi intermediate compartment)|GO:0007049(cell cycle)|GO:0016023(cytoplasmic membrane-bounded vesicle)|GO:0051301(cell division)
CAAGGCTGCCCTTCCCCAAGAGGTTAGCTGTGGGATTGGAAGATGAGATTTTTGTAATAT
16
192
298
ERCC-00085_231
ERCC-00085_231
pos
DQ883669
unmapped
17
192
296
ERCC-00034_158
ERCC-00034_158
pos
DQ855001
unmapped
18
192
294
A_42_P462015
A_42_P462015
FALSE
NM_001011943
NM_001011943 294025
Obfc1
oligonucleotide/oligosaccharide-binding fold containing 1
Rn.15899
ENSRNOT00000027614
ref|NM_001011943|ens|ENSRNOT00000027614|gb|BC079096|tc|TC580983
chr1:252883466-252881069
rn|1q54
Rattus norvegicus oligonucleotide/oligosaccharide-binding fold containing 1 (Obfc1), mRNA [NM_001011943]
GO:0000723(telomere maintenance)|GO:0000784(nuclear chromosome, telomeric region)|GO:0003677(DNA binding)|GO:0003697(single-stranded DNA binding)|GO:0005634(nucleus)|GO:0005694(chromosome)|GO:0010833(telomere maintenance via telomere lengthening)|GO:0043047(single-stranded telomeric DNA binding)|GO:0045740(positive regulation of DNA replication)|GO:0070188(Stn1-Ten1 complex)
TGGCTCCGATAAGCTGTACTATGTTACCAGTAAGGACAAAGACCTGCACCAGAAGATCTA
19
192
292
A_43_P19012
A_43_P19012
FALSE
NM_001010951
NM_001010951 298771
Prepl
prolyl endopeptidase-like
Rn.154511
ENSRNOT00000066503
ref|NM_001010951|ens|ENSRNOT00000066503|ens|ENSRNOT00000009660|ens|ENSRNOT00000061826
chr6:8421525-8421466
rn|6q12
Rattus norvegicus prolyl endopeptidase-like (Prepl), mRNA [NM_001010951]
GO:0004252(serine-type endopeptidase activity)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0006508(proteolysis)|GO:0008233(peptidase activity)
TTTCTTGGATGTTCTCAACACCATGATGGACAACACACTTCCGCTGACACTGGAAGAGTT
20
192
290
A_44_P318957
A_44_P318957
FALSE
NM_001014779
NM_001014779 680020
Pcdhb8
protocadherin beta 8
Rn.220357
ENSRNOT00000027190
ref|NM_001014779|ens|ENSRNOT00000027190|gb|XM_226000
chr18:30172041-30172100
rn|18p11
Rattus norvegicus protocadherin beta 8 (Pcdhb8), mRNA [NM_001014779]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
CTCTGGGACCTCAGATTTCAAGTTCATGAACCCTATCATTCCCACCAGTCTCCTTCAGGA
62976 38800 Kbytes .Supplementary data files not provided
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