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| Status |
Public on Jan 28, 2016 |
| Title |
Deep sequencing, profiling and detailed annotation of miRNAs in Takifugu rubripes |
| Organism |
Takifugu rubripes |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We performed extensive transcriptome analysis of the tiger pufferfish (Takifugu rubripes) using the next-generation sequencer SOLiD III, and profiled millions of small RNA sequences in somatic tissues and gonads, as well as identifying thousands of miRNAs. The number of miRNAs identified was the highest in fish species reported to date. We also report highly variable isomiR features.
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| Overall design |
miRNA expression profiles of 9 tissues (7-somatic tissues and 2-gonads) of torafugu were generated by deep sequencing using SOLiD3.
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| Contributor(s) |
Wongwarangkana C, Fujimori KE, Akiba M, Kinoshita S, Teruya M, Nezuo M, Masatoshi T, Watabe S, Asakawa S |
| Citation(s) |
26078057 |
| |
| Submission date |
Jan 28, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
chaninya wongwarangkana |
| E-mail(s) |
tarnjew@gmail.com
|
| Organization name |
the university of tokyo
|
| Department |
aquatic bioscience
|
| Lab |
aquatic molecular biology and biotechnology
|
| Street address |
1-1-1 Yayoi
|
| City |
Bunkyo-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
113-8657 |
| Country |
Japan |
| |
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| Platforms (1) |
| GPL19713 |
AB SOLiD System 3.0 (Takifugu rubripes) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA273883 |
| SRA |
SRP052920 |
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