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Series GSE65600 Query DataSets for GSE65600
Status Public on Mar 31, 2017
Title Diurnal variation for rice leaves in Fukuyama field in 2013
Organism Oryza sativa
Experiment type Expression profiling by array
Summary We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan.
In this seires of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Fukuyama.
Time-course transcriptional profiling of rice leaf in Fukuyama field in 2013. This experiment was performed to analyze the dynamics of field transcriptome data.
 
Overall design 24h time series with 2h interval were sampled for 2 developmental stage with no replicate.
The submitted samples were field transcirptome data in a paddy field at Fukuyama in Japan. Leaf samples were harvested in a 2 hr-interval for 13 times. This set corresponds to one-day time-series data. Transplanting dates and sampling dates varied as reported in each sample record.
 
Contributor(s) Izawa T
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Submission date Feb 04, 2015
Last update date Apr 01, 2017
Contact name Takeshi Izawa
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL19684 Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Samples (52)
GSM1600759 July_24_2013_at_08:00_in_Fukuyama_DPS_51
GSM1600760 July_24_2013_at_10:00_in_Fukuyama_DPS_51
GSM1600761 July_24_2013_at_12:00_in_Fukuyama_DPS_51
Relations
BioProject PRJNA274474

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65600_RAW.tar 6.3 Mb (http)(custom) TAR
GSE65600_S254663310009_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310009_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310026_A1.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65600_S254663310026_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310026_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310026_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310028_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310028_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310028_A3.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65600_S254663310028_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310030_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310030_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310030_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310030_A4.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310037_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65600_S254663310037_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310037_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310037_A4.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310038_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310038_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310038_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310038_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310058_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65600_S254663310058_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65600_S254663310058_A3.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65600_S254663310058_A4.txt.gz 42.0 Mb (ftp)(http) TXT
Processed data included within Sample table
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