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Platform GPL19684 Query DataSets for GPL19684
Status Public on Mar 31, 2015
Title Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryza sativa
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description The probe target is following 44k(build 3), eArray Best, eArray 2nd, Masked Best(IRGSP 1.0), Koshihikari eArray, Koshihikari 44k, PPNT protein cording, PPNT non protein cording, Cufflinks(IRGSP 1.0).

Arrays of this design have barcodes that begin with 16046633 or 2546633.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jan 22, 2015
Last update date Mar 31, 2015
Contact name Takeshi Izawa
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Samples (966) GSM1600656, GSM1600657, GSM1600658, GSM1600659, GSM1600660, GSM1600661 
Series (16)
GSE65598 Diurnal variation for rice leaves in Toyama field in 2012
GSE65599 Diurnal variation for rice leaves in Fukuoka field in 2013
GSE65600 Diurnal variation for rice leaves in Fukuyama field in 2013
Relations
Alternative to GPL18235 (ORF version)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF ORF Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ORF ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION
1 532 340 GE_BrightCorner GE_BrightCorner pos
2 532 338 DarkCorner DarkCorner pos
3 532 336 DarkCorner DarkCorner pos
4 532 334 DarkCorner DarkCorner pos
5 532 332 DarkCorner DarkCorner pos
6 532 330 DarkCorner DarkCorner pos
7 532 328 DarkCorner DarkCorner pos
8 532 326 DarkCorner DarkCorner pos
9 532 324 DarkCorner DarkCorner pos
10 532 322 DarkCorner DarkCorner pos
11 532 320 DarkCorner DarkCorner pos
12 532 318 DarkCorner DarkCorner pos
13 532 316 DarkCorner DarkCorner pos
14 532 314 DarkCorner DarkCorner pos
15 532 312 DarkCorner DarkCorner pos
16 532 310 DarkCorner DarkCorner pos
17 532 308 DarkCorner DarkCorner pos
18 532 306 DarkCorner DarkCorner pos
19 532 304 DarkCorner DarkCorner pos
20 532 302 DarkCorner DarkCorner pos

Total number of rows: 180880

Table truncated, full table size 11368 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL19684_046633_D_GEO_20140115_2_1.txt.gz 6.3 Mb (ftp)(http) TXT

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