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Status
Public on Mar 31, 2015
Title
Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Oryza sativa
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
The probe target is following 44k(build 3), eArray Best, eArray 2nd, Masked Best(IRGSP 1.0), Koshihikari eArray, Koshihikari 44k, PPNT protein cording, PPNT non protein cording, Cufflinks(IRGSP 1.0). Arrays of this design have barcodes that begin with 16046633 or 2546633. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jan 22, 2015
Last update date
Mar 31, 2015
Contact name
Takeshi Izawa
Organization name
National Institute of Agrobiological Sciences
Street address
2-1-2 Kannondai
City
Tsukuba
State/province
Ibaraki
ZIP/Postal code
305-8602
Country
Japan
Samples (966)
GSM1600656 , GSM1600657 , GSM1600658 , GSM1600659 , GSM1600660 , GSM1600661
GSM1600662 ,
GSM1600663 ,
GSM1600664 ,
GSM1600665 ,
GSM1600666 ,
GSM1600667 ,
GSM1600668 ,
GSM1600669 ,
GSM1600670 ,
GSM1600671 ,
GSM1600672 ,
GSM1600673 ,
GSM1600674 ,
GSM1600675 ,
GSM1600676 ,
GSM1600677 ,
GSM1600678 ,
GSM1600679 ,
GSM1600680 ,
GSM1600681 ,
GSM1600682 ,
GSM1600683 ,
GSM1600684 ,
GSM1600685 ,
GSM1600686 ,
GSM1600687 ,
GSM1600688 ,
GSM1600689 ,
GSM1600690 ,
GSM1600691 ,
GSM1600692 ,
GSM1600693 ,
GSM1600694 ,
GSM1600695 ,
GSM1600696 ,
GSM1600697 ,
GSM1600698 ,
GSM1600699 ,
GSM1600700 ,
GSM1600701 ,
GSM1600702 ,
GSM1600703 ,
GSM1600704 ,
GSM1600705 ,
GSM1600706 ,
GSM1600707 ,
GSM1600708 ,
GSM1600709 ,
GSM1600710 ,
GSM1600711 ,
GSM1600712 ,
GSM1600713 ,
GSM1600714 ,
GSM1600715 ,
GSM1600716 ,
GSM1600717 ,
GSM1600718 ,
GSM1600719 ,
GSM1600720 ,
GSM1600721 ,
GSM1600722 ,
GSM1600723 ,
GSM1600724 ,
GSM1600725 ,
GSM1600726 ,
GSM1600727 ,
GSM1600728 ,
GSM1600729 ,
GSM1600730 ,
GSM1600731 ,
GSM1600732 ,
GSM1600733 ,
GSM1600734 ,
GSM1600735 ,
GSM1600736 ,
GSM1600737 ,
GSM1600738 ,
GSM1600739 ,
GSM1600740 ,
GSM1600741 ,
GSM1600742 ,
GSM1600743 ,
GSM1600744 ,
GSM1600745 ,
GSM1600746 ,
GSM1600747 ,
GSM1600748 ,
GSM1600749 ,
GSM1600750 ,
GSM1600751 ,
GSM1600752 ,
GSM1600753 ,
GSM1600754 ,
GSM1600755 ,
GSM1600756 ,
GSM1600757 ,
GSM1600758 ,
GSM1600759 ,
GSM1600760 ,
GSM1600761 ,
GSM1600762 ,
GSM1600763 ,
GSM1600764 ,
GSM1600765 ,
GSM1600766 ,
GSM1600767 ,
GSM1600768 ,
GSM1600769 ,
GSM1600770 ,
GSM1600771 ,
GSM1600772 ,
GSM1600773 ,
GSM1600774 ,
GSM1600775 ,
GSM1600776 ,
GSM1600777 ,
GSM1600778 ,
GSM1600779 ,
GSM1600780 ,
GSM1600781 ,
GSM1600782 ,
GSM1600783 ,
GSM1600784 ,
GSM1600785 ,
GSM1600786 ,
GSM1600787 ,
GSM1600788 ,
GSM1600789 ,
GSM1600790 ,
GSM1600791 ,
GSM1600792 ,
GSM1600793 ,
GSM1600794 ,
GSM1600795 ,
GSM1600796 ,
GSM1600797 ,
GSM1600798 ,
GSM1600799 ,
GSM1600800 ,
GSM1600801 ,
GSM1600802 ,
GSM1600803 ,
GSM1600804 ,
GSM1600805 ,
GSM1600806 ,
GSM1600807 ,
GSM1600808 ,
GSM1600809 ,
GSM1600810 ,
GSM1600811 ,
GSM1600812 ,
GSM1600813 ,
GSM1600814 ,
GSM1600815 ,
GSM1600816 ,
GSM1600817 ,
GSM1600818 ,
GSM1600819 ,
GSM1600820 ,
GSM1600821 ,
GSM1600822 ,
GSM1600823 ,
GSM1600824 ,
GSM1600825 ,
GSM1600826 ,
GSM1600827 ,
GSM1600828 ,
GSM1600829 ,
GSM1600830 ,
GSM1600831 ,
GSM1600832 ,
GSM1600833 ,
GSM1600834 ,
GSM1600835 ,
GSM1600836 ,
GSM1600837 ,
GSM1600838 ,
GSM1600839 ,
GSM1600840 ,
GSM1600841 ,
GSM1600842 ,
GSM1600843 ,
GSM1600844 ,
GSM1600845 ,
GSM1600846 ,
GSM1600847 ,
GSM1600848 ,
GSM1600849 ,
GSM1600850 ,
GSM1600851 ,
GSM1600852 ,
GSM1600853 ,
GSM1600854 ,
GSM1600855 ,
GSM1600856 ,
GSM1600857 ,
GSM1600858 ,
GSM1600859 ,
GSM1600860 ,
GSM1600861 ,
GSM1600862 ,
GSM1600863 ,
GSM1600864 ,
GSM1600865 ,
GSM1600866 ,
GSM1600867 ,
GSM1600868 ,
GSM1600869 ,
GSM1600870 ,
GSM1600871 ,
GSM1600872 ,
GSM1600873 ,
GSM1600874 ,
GSM1600875 ,
GSM1600876 ,
GSM1600877 ,
GSM1600878 ,
GSM1600879 ,
GSM1600880 ,
GSM1600881 ,
GSM1600882 ,
GSM1600883 ,
GSM1600884 ,
GSM1600885 ,
GSM1600886 ,
GSM1600887 ,
GSM1600888 ,
GSM1600889 ,
GSM1600890 ,
GSM1600891 ,
GSM1600892 ,
GSM1600893 ,
GSM1600894 ,
GSM1600895 ,
GSM1600896 ,
GSM1600897 ,
GSM1600898 ,
GSM1600899 ,
GSM1600900 ,
GSM1600901 ,
GSM1600902 ,
GSM1600903 ,
GSM1600904 ,
GSM1600905 ,
GSM1600906 ,
GSM1600907 ,
GSM1600908 ,
GSM1600909 ,
GSM1600910 ,
GSM1600911 ,
GSM1600912 ,
GSM1600913 ,
GSM1600914 ,
GSM1600915 ,
GSM1600916 ,
GSM1600917 ,
GSM1600918 ,
GSM1600919 ,
GSM1600920 ,
GSM1600921 ,
GSM1600922 ,
GSM1600923 ,
GSM1600924 ,
GSM1600925 ,
GSM1600926 ,
GSM1600927 ,
GSM1600928 ,
GSM1600929 ,
GSM1600930 ,
GSM1600931 ,
GSM1600932 ,
GSM1600933 ,
GSM1600934 ,
GSM1600935 ,
GSM1600936 ,
GSM1600937 ,
GSM1600938 ,
GSM1600939 ,
GSM1600940 ,
GSM1600941 ,
GSM1600942 ,
GSM1600943 ,
GSM1600944 ,
GSM1600945 ,
GSM1600946 ,
GSM1600947 ,
GSM1600948 ,
GSM1600949 ,
GSM1600950 ,
GSM1600951 ,
GSM1600952 ,
GSM1600953 ,
GSM1600954 ,
GSM1600955 ,
GSM1600956 ,
GSM1600957 ,
GSM1600958 ,
GSM1600959 ,
GSM1600960 ,
GSM1600961 ,
GSM1600962 ,
GSM1600963 ,
GSM1600964 ,
GSM1600965 ,
GSM1600966 ,
GSM1600967 ,
GSM1600968 ,
GSM1600969 ,
GSM1600970 ,
GSM1600971 ,
GSM1600972 ,
GSM1600973 ,
GSM1600974 ,
GSM1600975 ,
GSM1600976 ,
GSM1600977 ,
GSM1600978 ,
GSM1600979 ,
GSM1600980 ,
GSM1600981 ,
GSM1600982 ,
GSM1600983 ,
GSM1600984 ,
GSM1600985 ,
GSM1600986 ,
GSM1600987 ,
GSM1600988 ,
GSM1600989 ,
GSM1600990 ,
GSM1600991 ,
GSM1600992 ,
GSM1600993 ,
GSM1600994 ,
GSM1600995 ,
GSM1600996 ,
GSM1600997 ,
GSM1600998 ,
GSM1600999 ,
GSM1601000 ,
GSM1601001 ,
GSM1601002 ,
GSM1601003 ,
GSM1601004 ,
GSM1601005 ,
GSM1601006 ,
GSM1601007 ,
GSM1601008 ,
GSM1601009 ,
GSM1601010 ,
GSM1601011 ,
GSM1601012 ,
GSM1601013 ,
GSM1601014 ,
GSM1601015 ,
GSM1601016 ,
GSM1601017 ,
GSM1601018 ,
GSM1601019 ,
GSM1601020 ,
GSM1601021 ,
GSM1601022 ,
GSM1601023 ,
GSM1601024 ,
GSM1601025 ,
GSM1601026 ,
GSM1601027 ,
GSM1601028 ,
GSM1601029 ,
GSM1601030 ,
GSM1601031 ,
GSM1601032 ,
GSM1601033 ,
GSM1601034 ,
GSM1601035 ,
GSM1601036 ,
GSM1601037 ,
GSM1601038 ,
GSM1601039 ,
GSM1601040 ,
GSM1601041 ,
GSM1601042 ,
GSM1601043 ,
GSM1601044 ,
GSM1601045 ,
GSM1601046 ,
GSM1601047 ,
GSM1601048 ,
GSM1601049 ,
GSM1601050 ,
GSM1601051 ,
GSM1601052 ,
GSM1601053 ,
GSM1601054 ,
GSM1601055 ,
GSM1601056 ,
GSM1601057 ,
GSM1601058 ,
GSM1601059 ,
GSM1601060 ,
GSM1601061 ,
GSM1601062 ,
GSM1601063 ,
GSM1601064 ,
GSM1601065 ,
GSM1601066 ,
GSM1601067 ,
GSM1601068 ,
GSM1601069 ,
GSM1601070 ,
GSM1601071 ,
GSM1601072 ,
GSM1601073 ,
GSM1601074 ,
GSM1601075 ,
GSM1601076 ,
GSM1601077 ,
GSM1601078 ,
GSM1601079 ,
GSM1601080 ,
GSM1601081 ,
GSM1601082 ,
GSM1601083 ,
GSM1601084 ,
GSM1601085 ,
GSM1601086 ,
GSM1601087 ,
GSM1601088 ,
GSM1601089 ,
GSM1601090 ,
GSM1601091 ,
GSM1601092 ,
GSM1601093 ,
GSM1601094 ,
GSM1601095 ,
GSM1601096 ,
GSM1601097 ,
GSM1601098 ,
GSM1601099 ,
GSM1601100 ,
GSM1601101 ,
GSM1601102 ,
GSM1601103 ,
GSM1601104 ,
GSM1601105 ,
GSM1601106 ,
GSM1601107 ,
GSM1601108 ,
GSM1601109 ,
GSM1601110 ,
GSM1601111 ,
GSM1601112 ,
GSM1601113 ,
GSM1601114 ,
GSM1601115 ,
GSM1601116 ,
GSM1601117 ,
GSM1601118 ,
GSM1601119 ,
GSM1601120 ,
GSM1601121 ,
GSM1601122 ,
GSM1601123 ,
GSM1601124 ,
GSM1601125 ,
GSM1601126 ,
GSM1601127 ,
GSM1601128 ,
GSM1601129 ,
GSM1601130 ,
GSM1601131 ,
GSM1601132 ,
GSM1601133 ,
GSM1601134 ,
GSM1601135 ,
GSM1601136 ,
GSM1601137 ,
GSM1601138 ,
GSM1601139 ,
GSM1601140 ,
GSM1601141 ,
GSM1601142 ,
GSM1601143 ,
GSM1601144 ,
GSM1601145 ,
GSM1601146 ,
GSM1601147 ,
GSM1601148 ,
GSM1601149 ,
GSM1601150 ,
GSM1601151 ,
GSM1601152 ,
GSM1601153 ,
GSM1601154 ,
GSM1601155 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (16)
GSE65598
Diurnal variation for rice leaves in Toyama field in 2012
GSE65599
Diurnal variation for rice leaves in Fukuoka field in 2013
GSE65600
Diurnal variation for rice leaves in Fukuyama field in 2013
GSE65601
Diurnal variation for rice leaves in Furukawa field in 2013
GSE65602
Diurnal variation for rice leaves in Sapporo field in 2013
GSE65603
Diurnal variation for rice leaves in Takatsuki field in 2013
GSE65604
Diurnal variation for rice leaves in Toyama field in 2013
GSE65605
Diurnal variation for rice leaves in Tsukuba field in 2013
GSE65606
Two time-points for fertilized rice leaves in Tsukuba field in 2013
GSE65607
Diurnal variation for rice leaves in Fukuoka field in 2014
GSE65608
Diurnal variation for rice leaves in Fukuyama field in 2014
GSE65609
Diurnal variation for rice leaves in Sapporo field in 2014
GSE65610
Diurnal variation for rice leaves in Takatsuki field in 2014
GSE65611
Diurnal variation for rice leaves in Toyama field in 2014
GSE65612
Diurnal variation for rice leaves in Tsukuba field in 2014
GSE65614
Diurnal variation for rice leaves in Furukawa field in 2014
Relations
Alternative to
GPL18235 (ORF version)
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ORF
ORF Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ORF
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
1
532
340
GE_BrightCorner
GE_BrightCorner
pos
2
532
338
DarkCorner
DarkCorner
pos
3
532
336
DarkCorner
DarkCorner
pos
4
532
334
DarkCorner
DarkCorner
pos
5
532
332
DarkCorner
DarkCorner
pos
6
532
330
DarkCorner
DarkCorner
pos
7
532
328
DarkCorner
DarkCorner
pos
8
532
326
DarkCorner
DarkCorner
pos
9
532
324
DarkCorner
DarkCorner
pos
10
532
322
DarkCorner
DarkCorner
pos
11
532
320
DarkCorner
DarkCorner
pos
12
532
318
DarkCorner
DarkCorner
pos
13
532
316
DarkCorner
DarkCorner
pos
14
532
314
DarkCorner
DarkCorner
pos
15
532
312
DarkCorner
DarkCorner
pos
16
532
310
DarkCorner
DarkCorner
pos
17
532
308
DarkCorner
DarkCorner
pos
18
532
306
DarkCorner
DarkCorner
pos
19
532
304
DarkCorner
DarkCorner
pos
20
532
302
DarkCorner
DarkCorner
pos
Total number of rows: 180880 Table truncated, full table size 11368 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL19684_046633_D_GEO_20140115_2_1.txt.gz
6.3 Mb
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TXT