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Series GSE65601 Query DataSets for GSE65601
Status Public on Mar 31, 2017
Title Diurnal variation for rice leaves in Furukawa field in 2013
Organism Oryza sativa
Experiment type Expression profiling by array
Summary We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan.
In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Furukawa.
Time-course transcriptional profiling of rice leaf in Furukawa field in 2013. This experiment was performed to analyze the dynamics of field transcriptome data.
 
Overall design 24h time series with 2h interval were sampled for 2 developmental stage with no replicate.
The submitted samples were field transcirptome data in a paddy field at Furukawa in Japan. Leaf samples were harvested in a 2 hr-interval for 13 times. This set corresponds to one-day time-series data. Transplanting dates and sampling dates varied as reported in the data sheet.
 
Contributor(s) Izawa T
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Submission date Feb 04, 2015
Last update date Apr 01, 2017
Contact name Takeshi Izawa
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL19684 Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Samples (52)
GSM1600811 July_19_2013_at_08:00_in_Furukawa_DPS_36
GSM1600812 July_19_2013_at_10:00_in_Furukawa_DPS_36
GSM1600813 July_19_2013_at_12:00_in_Furukawa_DPS_36
Relations
BioProject PRJNA274473

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65601_RAW.tar 6.3 Mb (http)(custom) TAR
GSE65601_S254663310062_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310062_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310063_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310063_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310063_A3.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65601_S254663310063_A4.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65601_S254663310064_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310064_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65601_S254663310064_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310064_A4.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310065_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310065_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310065_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310065_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310066_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65601_S254663310066_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310066_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310066_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310068_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65601_S254663310068_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310068_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310068_A4.txt.gz 42.4 Mb (ftp)(http) TXT
GSE65601_S254663310120_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310120_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65601_S254663310120_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65601_S254663310120_A4.txt.gz 42.1 Mb (ftp)(http) TXT
Processed data included within Sample table
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