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Series GSE65609 Query DataSets for GSE65609
Status Public on Mar 31, 2017
Title Diurnal variation for rice leaves in Sapporo field in 2014
Organism Oryza sativa
Experiment type Expression profiling by array
Summary We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan. In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Sapporo.
Time-course transcriptional profiling of rice leaf in Sapporo field in 2014. This experiment was performed to analyze the dynamics of field transcriptome data.
 
Overall design 24h time series with 2h interval were sampled for 2 developmental stage with no replicate.
The submitted samples were field transcirptome data in a paddy field at Sapporo in Japan. Leaf samples were harvested in a 2 hr-interval for 13 times. This set corresponds to one-day time-series data. Transplanting dates and sampling dates varied as reported in each sample record.
 
Contributor(s) Izawa T
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Submission date Feb 04, 2015
Last update date Apr 01, 2017
Contact name Takeshi Izawa
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL19684 Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Samples (52)
GSM1601279 July_25_2014_at_08:00_in_Sapporo_DPS_64
GSM1601280 July_25_2014_at_10:00_in_Sapporo_DPS_64
GSM1601281 July_25_2014_at_12:00_in_Sapporo_DPS_64
Relations
BioProject PRJNA274479

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65609_RAW.tar 6.3 Mb (http)(custom) TAR
GSE65609_S254663310153_A2.txt.gz 42.4 Mb (ftp)(http) TXT
GSE65609_S254663310153_A3.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65609_S254663310153_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65609_S254663310155_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310155_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310155_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310155_A4.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310158_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310158_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310158_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310158_A4.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65609_S254663310160_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310160_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310160_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310173_A1.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310173_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310173_A3.txt.gz 41.9 Mb (ftp)(http) TXT
GSE65609_S254663310173_A4.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310176_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310176_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310176_A3.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310176_A4.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310177_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310177_A2.txt.gz 42.0 Mb (ftp)(http) TXT
GSE65609_S254663310177_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65609_S254663310177_A4.txt.gz 42.0 Mb (ftp)(http) TXT
Processed data included within Sample table
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