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Series GSE65612 Query DataSets for GSE65612
Status Public on Mar 31, 2017
Title Diurnal variation for rice leaves in Tsukuba field in 2014
Organism Oryza sativa
Experiment type Expression profiling by array
Summary We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan. In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Tsukuba.
Time-course transcriptional profiling of rice leaf in Tsukuba field in 2014. This experiment was performed to analyze the dynamics of field transcriptome data.
 
Overall design 24h time series with 2h interval were sampled for 2 developmental stage with no replicate.
The submitted samples were field transcirptome data in a paddy field at Tsukuba in Japan. Leaf samples were harvested in a 6 hr(or 8hr)-interval for 13 times. This set corresponds to three-day time-series data. Transplanting dates varied as reported in each sample record.
 
Contributor(s) Izawa T
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Submission date Feb 04, 2015
Last update date Apr 01, 2017
Contact name Takeshi Izawa
Organization name National Institute of Agrobiological Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL19684 Agilent-046633 Oryza sativa 180K array os_180k_130118 (Feature Number version)
Samples (103)
GSM1601467 July_18_2014_at_08:00_in_Tsukuba_DPS_64
GSM1601468 July_18_2014_at_08:00_in_Tsukuba_DPS_37
GSM1601469 July_18_2014_at_08:00_in_Tsukuba_DPS_64_Fer
Relations
BioProject PRJNA274476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65612_RAW.tar 48.5 Mb (http)(custom) TAR (of TXT)
GSE65612_S254663310127_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310127_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310127_A3.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310127_A4.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310128_A1.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310128_A2.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310128_A3.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310128_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310129_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65612_S254663310129_A3.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310129_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310130_A1.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310130_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310130_A3.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310130_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310133_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310133_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310133_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65612_S254663310133_A4.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310134_A1.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310134_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310134_A3.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65612_S254663310134_A4.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310135_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310135_A2.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310135_A3.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310135_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310142_A1.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310142_A2.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310142_A3.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310142_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310143_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310143_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310143_A3.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310143_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310144_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310144_A2.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65612_S254663310144_A3.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310144_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310145_A1.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310145_A2.txt.gz 42.2 Mb (ftp)(http) TXT
GSE65612_S254663310148_A1.txt.gz 42.4 Mb (ftp)(http) TXT
GSE65612_S254663310148_A2.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310148_A3.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310148_A4.txt.gz 42.3 Mb (ftp)(http) TXT
GSE65612_S254663310149_A1.txt.gz 42.4 Mb (ftp)(http) TXT
GSE65612_S254663310149_A2.txt.gz 42.5 Mb (ftp)(http) TXT
GSE65612_S254663310149_A3.txt.gz 42.4 Mb (ftp)(http) TXT
GSE65612_S254663310149_A4.txt.gz 42.5 Mb (ftp)(http) TXT
GSE65612_S254663310154_A1.txt.gz 42.1 Mb (ftp)(http) TXT
GSE65612_S254663310154_A2.txt.gz 42.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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