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Series GSE67405 Query DataSets for GSE67405
Status Public on Mar 01, 2016
Title Affymetrix SNP array data for B-lineage acute lymphoblastic leukemia
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary To shed light on the molecular bases of B-lineage acute lymphoblastic leukemia lacking known rearrangements (B-NEG ALL) and the differences between children and adults, we analyzed 168 B-NEG ALLs - including children, adolescents/young adults (AYA) and adults by genome-wide technologies, namely Next-generation sequencing and copy number aberration (CNA).
Affymetrix SNP array analysis was performed according to the manufacturer's directions on DNA extracted from bone marrow sampled at diagnosis and paired germline DNA extracted from peripheral blood/bone marrow at complete remission or saliva.
 
Overall design Copy number analysis of Affymetrix SNP 6.0 arrays was performed for 13 B-NEG ALL samples and their paired normal (non-tumoral) DNA samples, included in the discovery panel, processed in the same experiment and deposited.
 
Contributor(s) Messina M
Citation(s) 26883104
Submission date Mar 30, 2015
Last update date Nov 27, 2018
Contact name Monica Messina
E-mail(s) messina@bce.uniroma1.it
Organization name Sapienza University
Department Department of Cellular Biotechnologies and Hematology
Lab Genomics
Street address Via Benevento 26
City Rome
ZIP/Postal code 00161
Country Italy
 
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (25)
GSM1646364 B-lineage acute lymphoblastic leukemia_1A
GSM1646365 B-lineage acute lymphoblastic leukemia_2A
GSM1646366 B-lineage acute lymphoblastic leukemia_3A
Relations
BioProject PRJNA279840

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67405_B-NEG_ALL.cnmz.txt.gz 240.9 Mb (ftp)(http) TXT
GSE67405_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL, CHP, TXT)
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record
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