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Series GSE68403 Query DataSets for GSE68403
Status Public on Apr 28, 2016
Title Development of a glycan microarray based method for ABO blood typing
Platform organisms Quercus alba; Gossypium hirsutum; Rhodotorula; Trypanosoma cruzi; Pandalus borealis; Oncorhynchus nerka; Gallus gallus; Homo sapiens; Bos taurus; Ovis aries; Mus musculus; Ceratonia siliqua; Megathura crenulata; Bothrops moojeni; Frangula alnus; Senegalia senegal; Pachymenia carnosa; Dermestes lardarius
Sample organism Homo sapiens
Experiment type Other
Summary Purpose: This study uses a high-throughput glycan microarray to develop a novel method to assign ABO blood type. The method will then be applied to samples from patients treated with PROSTVAC to determine if blood type correlates with survival
Results: Many blood group A and B antigens correlate with blood type. Blood typing is best achieved using a combination of 10 signals
Conclusion: ABO blood type can be determined with greater than 97% accuracy using only 4 microliters of serum.
 
Overall design Sera from 220 healthy subjects was divided into a training set (n=60), and test set (n=40), and a validation set (n=120). The training set was used to evaluate various methods for assigning blood type. The best methods were then further evaluated and refined with the test set. Finally, the best blood typing method was applied to the validation set to more extensively assess accuracy.
 
Contributor(s) Muthana S, Gulley JL, Hodge JW, Schlom J, Gildersleeve JC
Citation(s) 26338967
Submission date Apr 29, 2015
Last update date Jul 28, 2016
Contact name Jeff Gildersleeve
Organization name National Cancer Institute
Street address 376 Boyles St.
City Frederick
State/province MD
ZIP/Postal code 21702
Country USA
 
Platforms (1)
GPL20116 NCI Glycoarray-380
Samples (220)
GSM1670921 h1: Training Set - Subject #1
GSM1670922 h2: Training Set - Subject #2
GSM1670923 h3: Training Set - Subject #3
This SubSeries is part of SuperSeries:
GSE68405 A Simple, Inexpensive Strategy for Predicting Potential Beneficial Clinical Responses on Prostate Cancer Vaccine Therapy
Relations
BioProject PRJNA282665

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68403_Healthy_subjects_IgG_1-50.txt.gz 341.7 Kb (ftp)(http) TXT
GSE68403_Healthy_subjects_IgM_1-50.txt.gz 443.0 Kb (ftp)(http) TXT
GSE68403_RAW_FILES.tar.gz 65.0 Mb (ftp)(http) TAR
GSE68403_RAW_FILES_README.txt 16.5 Kb (ftp)(http) TXT
Processed data are available on Series record

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