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Series GSE69662 Query DataSets for GSE69662
Status Public on Jun 10, 2015
Title Autoantigen microarrays reveal autoantibodies associated with proliferative nephritis and active disease in pediatric systemic lupus erythematosus
Platform organisms Escherichia coli; Gallus gallus; Homo sapiens; Bos taurus; Oryctolagus cuniculus; Mus musculus
Sample organism Homo sapiens
Experiment type Protein profiling by protein array
Summary Introduction: Pediatric systemic lupus erythematosus (pSLE) patients often initially present with more active and severe disease than adults, including a higher frequency of lupus nephritis. Specific autoantibodies, including anti-C1q, anti-DNA and anti-alpha-actinin, have been associated with kidney involvement in SLE, and DNA antibodies are capable of initiating early stage lupus nephritis in severe combined immunodeficiency (SCID) mice. Over 100 different autoantibodies have been described in SLE patients, highlighting the need for comprehensive autoantibody profiling. Knowledge of the antibodies associated with pSLE and proliferative nephritis will increase the understanding of SLE pathogenesis, and may aid in monitoring patients for renal flare.

Methods: We used autoantigen microarrays composed of 140 recombinant or purified antigens to compare the serum autoantibody profiles of new-onset pSLE patients (n=45) to healthy controls (n=17). We also compared pSLE patients with biopsy-confirmed class III or IV proliferative nephritis (n=23) and without significant renal involvement (n=18). We performed ELISA with selected autoantigens to validate the microarray findings. We created a multiple logistic regression model, based on the ELISA and clinical information, to predict whether a patient had proliferative nephritis, and used a validation cohort (n=23) and longitudinal samples (88 patient visits) to test its accuracy.

Results: Fifty autoantibodies were at significantly higher levels in the sera of pSLE patients compared to healthy controls, including anti-B-cell activating factor (BAFF). High levels of anti-BAFF were associated with active disease. Thirteen serum autoantibodies were present at significantly higher levels in pSLE patients with proliferative nephritis than those without, and we confirmed five autoantigens (dsDNA, C1q, collagens IV & X and aggrecan) by ELISA. Our model, based on ELISA measurements and clinical variables, correctly identified patients with proliferative nephritis with 91% accuracy.

Conclusions: Autoantigen microarrays are an ideal platform for identifying autoantibodies associated with both pSLE and specific clinical manifestations of pSLE. Using multiple regression analysis to integrate autoantibody and clinical data permits accurate prediction of clinical manifestations with complex etiologies in pSLE.
 
Overall design We analyzed new-onset pSLE patients (n=45) and healthy controls (n=17)
 
Contributor(s) Haddon DJ, Balboni IM, Utz PJ
Citation(s) 26081107
Submission date Jun 08, 2015
Last update date Sep 09, 2015
Contact name Jamie Haddon
Organization name Stanford University
Department Immunology & Rheumatology
Street address CCSR Rm 2250, 269 Campus Drive West
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL20296 Utz Lab Whole Protein Autoantigen Array V3.0
Samples (62)
GSM1705438 Serum_Healthy-C3_rep1
GSM1705439 Serum_Healthy-C4_rep1
GSM1705440 Serum_Healthy-C5_rep1
Relations
BioProject PRJNA286254

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69662_RAW.tar 3.0 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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