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Series GSE70303 Query DataSets for GSE70303
Status Public on Mar 15, 2016
Title Identification of DNA methylation-independent epigenetic events underlying clear cell renal cell carcinoma
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome-wide analysis of endogenous and exogenous methylation in human ccRCC tumor and adjacent normal tissue to determine DNA methylation and chromatin structure states in ccRCC.
 
Overall design Nuclei from the 6 patient kidney tumor and normal samples were either treated or not-treated with M.SssI enzyme, DNA was extracted and bisulfite-converted, then hybridised to the Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
 
Contributor(s) Becket E, Chopra S, Duymich C, Lin JJ, You JS, Pandiyan K, Nichols PW, Siegmund K, Charlet J, Weisenberger DJ, Jones PA, Liang G
Citation(s) 26759245
Submission date Jun 26, 2015
Last update date Mar 22, 2019
Contact name Gangning Liang
E-mail(s) gliang@usc.edu
Phone 323-865-0470
Organization name University of Southern California
Department Urology
Lab Gangning Liang Laboratory
Street address 1441 Eastlake Ave, NOR 7344
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM1723409 Patient 1 Normal Kidney Tissue No Enzyme Treatment
GSM1723410 Patient 1 Normal Kidney Tissue +M.SssI Treatment
GSM1723411 Patient 1 ccRCC Tumor Tissue No Enzyme Treatment
Relations
BioProject PRJNA288277

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70303_Matrix_signal_intensities.txt.gz 134.0 Mb (ftp)(http) TXT
GSE70303_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table

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