|
| Status |
Public on Mar 15, 2016 |
| Title |
Patient 2 ccRCC Tumor Tissue No Enzyme Treatment |
| Sample type |
genomic |
| |
|
| Source name |
CCTUO11275, Patient 2 ccRCC Tumor Tissue
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: Clear cell renal cell carcinoma (CCRCC)
tissue type: ccRCC tumor
|
| Treatment protocol |
Tissue was homoegenized and nuclei extracted, then treated as in Pandiyan, et al (2013), Nucleic Acids Research, PMID: 23408854
|
| Growth protocol |
N/A, tissue was harvested directly from patients during nephrectomy
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Phenol/chloroform extraction with ethanol precipitation
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
7800246212_R05C01
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Jun 26, 2015 |
| Last update date |
Mar 15, 2016 |
| Contact name |
Gangning Liang |
| E-mail(s) |
gliang@usc.edu
|
| Phone |
323-865-0470
|
| Organization name |
University of Southern California
|
| Department |
Urology
|
| Lab |
Gangning Liang Laboratory
|
| Street address |
1441 Eastlake Ave, NOR 7344
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE70303 |
Identification of DNA methylation-independent epigenetic events underlying clear cell renal cell carcinoma |
|
