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Series GSE70950 Query DataSets for GSE70950
Status Public on Jul 09, 2017
Title Cocoa polyphenols and fiber modify colonic gene expression in rats
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Cocoa intake has been associated with health benefits, improving cardiovascular function and metabolism, as well as modulating intestinal immune function. The aim of this study was to take an in-depth look into the mechanisms affected by the cocoa intake by evaluating the colonic gene expression after nutritional intervention, and to ascertain the role of the fiber of cocoa in these effects. To achieve this, Wistar rats were fed for 3-weeks with either a reference diet, a diet containing 10% cocoa (C10), a diet based on cocoa fiber (CF) or a diet containing inulin (I). At the end of the study, colon was excised to obtain the RNA to evaluate the differential gene expression by microarray. Results were validated by RT-PCR. The C10 group was the group with most changes in colonic gene expression, most of them down-regulated but a few in common with the CF diet. The C10 diet significantly up-regulated the expression of Scgb1a1 and Scnn1g and down-regulated Tac4, Mcpt2, Fcer1a and Fabp1 by twofold, most of them related to lipid metabolism and immune function. The CF and I diets down-regulated the expression of Serpina10 and Apoa4 by twofold. Similar patterns of expression were found by PCR. Cocoa consumption down-regulated genes related to the immune system (B cell and mast cell functionality), lipid metabolism in the colon tissue. Most of the beneficial effects attributed to cocoa were due not only to its fiber content, but also to the possible contribution of polyphenols and other compounds.
 
Overall design Four experimental groups (REF, Cocoa, Cocoa Fiber and Inulin diets (n=4 per group)
 
Contributor(s) Massot-Cladera M, Franch À, Castell M, Pérez-Cano FJ
Citation(s) 27256297
Submission date Jul 15, 2015
Last update date Aug 02, 2017
Contact name Francisco Jose Pérez-Cano
E-mail(s) fjperezcano@gmail.com
Organization name Universitat de Barcelona
Department Departament de Fisiologia-Farmàcia
Street address Edifici B, 3a planta, Av. Joan XXIII s/n
City Barcelona
State/province Catalunya
ZIP/Postal code 08028
Country Spain
 
Platforms (1)
GPL14797 Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version)
Samples (8)
GSM1824014 MMC10 vs MMC2
GSM1824015 MMC4 vs MMC11
GSM1824016 MMC19 vs MMC13
Relations
BioProject PRJNA290004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70950_RAW.tar 48.0 Mb (http)(custom) TAR (of TXT)
GSE70950_normalized_data_with_probename.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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