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| Status |
Public on Sep 01, 2017 |
| Title |
Segregation of naturally occurring mitochondrial DNA variants in a mini-pig model |
| Organism |
Sus scrofa |
| Experiment type |
SNP genotyping by SNP array
Genome variation profiling by SNP array
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| Summary |
We have generated a mini-pig model to study the transmission of naturally occuring mitochondrial DNA variants. To determine the chromosomal genotype of the model's founders, we have used the Illumina PorcineSNP60 v2 BeadChip.
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| Overall design |
DNA extracted from 15 mini-pig samples was run on an Illumina PorcineSNP60 v2 BeadChip, containing 61,565 SNPs, delivering uniform genome-wide coverage with an average probe spacing of 43.4 Kb. Image processing and SNP calling were performed using the genotyping module of GenomeStudio software (GenCall cutoff for failed genotypes of 0.15, = software versions 1.9.4 and 2011.1, respectively).
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| Contributor(s) |
Cagnone GL, Tsai T, Srirattana K, Rossello F, Powell DR, Trounce IA, Rohrer G, Cree L, St.John JC |
| Citation(s) |
26819245 |
| |
| Submission date |
Sep 21, 2015 |
| Last update date |
Sep 01, 2017 |
| Contact name |
Justin StJohn |
| E-mail(s) |
justin.stjohn@hudson.org.au
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| Phone |
61399024749
|
| Organization name |
Hudson Institute of Medical Research
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| Department |
Centre for Genetic Diseases
|
| Street address |
27-31 Wright Street
|
| City |
Clayton |
| State/province |
Victoria |
| ZIP/Postal code |
3168 |
| Country |
Australia |
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| Platforms (1) |
| GPL11379 |
Illumina Porcine SNP60 BeadChip (WG-410) |
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| Samples (24)
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| Relations |
| BioProject |
PRJNA296511 |
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