|
| Status |
Public on Sep 01, 2017 |
| Title |
R1_1 |
| Sample type |
genomic |
| |
|
| Source name |
Blood
|
| Organism |
Sus scrofa |
| Characteristics |
individual: mini-pig R1
tissue: blood
|
| Treatment protocol |
No treatments were performed
|
| Growth protocol |
Blood was drawn from live pigs
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of genomic DNA from fresh blood was performed using the Isolate II Genomic DNA kit (Bioline, London, UK) including proteinase K and RNase treatments, according to the manufacturer’s instructions.
|
| Label |
biotin
|
| Label protocol |
Samples were labelled according to the Infinium HD Assay Ultra protocol
|
| |
|
| Hybridization protocol |
Samples were hybridized according to the Infinium HD Assay Ultra protocol
|
| Scan protocol |
Samples were scanned according to the Infinium HD Assay Ultra protocol
|
| Description |
SAMPLE 9
|
| Data processing |
Genomic DNA extracted from pig blood samples was genotyped using Illumina PorcineSNP60 v2 BeadChip
Image processing and SNP calling were performed using the genotyping module of Illumina GenomeStudio software (GenCall cutoff for failed genotypes of 0.15, = software versions 1.9.4 and 2011.1, respectively).
|
| |
|
| Submission date |
Sep 21, 2015 |
| Last update date |
Sep 01, 2017 |
| Contact name |
Justin StJohn |
| E-mail(s) |
justin.stjohn@hudson.org.au
|
| Phone |
61399024749
|
| Organization name |
Hudson Institute of Medical Research
|
| Department |
Centre for Genetic Diseases
|
| Street address |
27-31 Wright Street
|
| City |
Clayton |
| State/province |
Victoria |
| ZIP/Postal code |
3168 |
| Country |
Australia |
| |
|
| Platform ID |
GPL11379 |
| Series (1) |
| GSE73276 |
Segregation of naturally occurring mitochondrial DNA variants in a mini-pig model |
|
