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Series GSE73378 Query DataSets for GSE73378
Status Public on Sep 24, 2015
Title Whole blood gene expression profiles of patients with a past aneurysmal subarachnoid hemorrhage
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Investigation of gene expression profiles in blood of previous aSAH patients, aiming to gain insight into the pathogenesis of IA and aSAH, and to make a first step towards improvement of aSAH risk prediction. The results indicate that no gene expression differences are present in blood of previous aSAH patients compared to controls, besides one differentially co-expressed gene network without a clear relevant biological function.
 
Overall design We collected peripheral blood of 119 patients with aSAH at least two years prior, and 118 controls. We determined gene expression profiles using Illumina HumanHT-12v4 BeadChips. After quality control, we divided the dataset in a discovery (2/3) and replication set (1/3), identified differentially expressed genes, and applied (co-)differential co-expression to identify disease-related gene networks.
 
Contributor(s) van 't Hof FG, Ruigrok YM, Medic J, Sanjabi B, van der Vlies P, Rinkel GE, Veldink JH
Citation(s) 26439625
Submission date Sep 23, 2015
Last update date Aug 13, 2018
Contact name Femke NG van 't Hof
E-mail(s) f.vanthof@umcutrecht.nl
Organization name University medical center Utrecht
Street address Heidelberglaan 100
City Utrecht
ZIP/Postal code 3584 CX
Country Netherlands
 
Platforms (2)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol)
Samples (226)
GSM1892063 Whole blood CONTROL 5786073003_A
GSM1892064 Whole blood CONTROL 5786073003_B
GSM1892065 Whole blood CASE 5786073003_C
Relations
BioProject PRJNA296820

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE73378_RAW.tar 26.2 Mb (http)(custom) TAR
GSE73378_non-normalized.txt.gz 49.7 Mb (ftp)(http) TXT
GSE73378_normalized.txt.gz 50.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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