|
| Status |
Public on Sep 30, 2015 |
| Title |
CGH: Transgenic soybeans and controls |
| Organism |
Glycine max |
| Experiment type |
Genome variation profiling by genome tiling array
|
| Summary |
Transgenic soybean lines were compared to their parental lines by CGH to catalog structurally variant (e.g. deletion and duplication) regions among these genotypes.
The CGH comparisons reveal reveal putative deletions and duplications among the 5 lines.
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| |
|
| Overall design |
Transgenic soybean lines were compared to their parent lines ('Bert-MN-01' or 'Wm82-ISU-01', depending on the transgenic plant). Each transgenic line was represented by a single individual T1 generation plant. The reported values show the log2 ratio of the normalized transgenic line hybridization signals (Cy3) over the normalized parent line hybridization signal (Cy5).
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| |
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| Contributor(s) |
Stupar RM, Stec AO, Anderson JE |
| Citation(s) |
27176220 |
| |
| Submission date |
Sep 30, 2015 |
| Last update date |
May 27, 2020 |
| Contact name |
Robert M Stupar |
| E-mail(s) |
stup0004@umn.edu
|
| Organization name |
University of Minnesota
|
| Department |
Agronomy and Plant Genetics
|
| Street address |
1991 Upper Buford Circle
|
| City |
Saint Paul |
| State/province |
MN |
| ZIP/Postal code |
55108 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18500 |
Soybean 1.4 Million CGH microarray |
|
| Samples (7)
|
|
| Relations |
| BioProject |
PRJNA297398 |
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