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Series GSE74836 Query DataSets for GSE74836
Status Public on Jun 10, 2016
Title Sigma38 binding sites in E. Coli
Organism Escherichia coli str. K-12 substr. MG1655
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq to identify sigma38 binding sites in wild-type and delta ssrS (6S RNA knockout) strains of E. Coli K-12 MG1655, during stationary phase
 
Overall design ChIP-seq using antibody against sigma38 in wild-type and ssrS deletion strain. Two replicates for wild type and one replicate for ssrS deletion.
 
Contributor(s) Lal A, Seshasayee A
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Submission date Nov 09, 2015
Last update date May 15, 2019
Contact name Avantika Lal
E-mail(s) avantika@ncbs.res.in
Organization name National Centre for Biological Sciences
Street address GKVK, Bellary Road
City Bangalore
ZIP/Postal code 560065
Country India
 
Platforms (1)
GPL21117 Illumina NextSeq 500 (Escherichia coli str. K-12 substr. MG1655)
Samples (6)
GSM1936193 wt_1_IP
GSM1936194 wt_1_input
GSM1936195 wt_2_IP
Relations
BioProject PRJNA301623
SRA SRP065973

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74836_s1_peaks.narrowPeak.gz 1.7 Kb (ftp)(http) NARROWPEAK
GSE74836_w1_peaks.narrowPeak.gz 4.7 Kb (ftp)(http) NARROWPEAK
GSE74836_w2_peaks.narrowPeak.gz 7.5 Kb (ftp)(http) NARROWPEAK
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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