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| Status |
Public on Aug 17, 2016 |
| Title |
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis [small RNA-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report the small RNA analysis of Arabidopsis plants deficient for the expression DDB2 involved in global genome repair using small RNA sequencing. In addition we performed RNA immunoprecipitation (RIP) of DDB2.
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| |
|
| Overall design |
siRNA sequencing in WT, ddb2-3 and nrpd1a plants
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| |
|
| Contributor(s) |
Molinier J |
| Citation(s) |
27531226 |
| |
| Submission date |
Jan 07, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jean Molinier |
| E-mail(s) |
Jean.Molinier@ibmp-cnrs.unistra.fr
|
| Phone |
+33 (0) 3 67 15 53 12
|
| Organization name |
IBMP-CNRS
|
| Street address |
12 rue du General Zimmer
|
| City |
Strasbourg |
| ZIP/Postal code |
67084 |
| Country |
France |
| |
|
| Platforms (2) |
| GPL9062 |
Illumina Genome Analyzer (Arabidopsis thaliana) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (3) |
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| This SubSeries is part of SuperSeries: |
| GSE76651 |
Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis |
|
| Relations |
| BioProject |
PRJNA308232 |
| SRA |
SRP068209 |
