NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE76991 Query DataSets for GSE76991
Status Public on Mar 07, 2016
Title Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis
Organism Xenopus laevis
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced cDNA prepared from ribosomal RNA depleted total RNA of 10-10 embryos injected with Gcn5-antisense oligonucleotides and with water to create expression profiles of Gcn5 knockdown and control, respectively, in Xenopus laevis at early embryonic developmental stage 10.5. (according to Nieuwkoop and Faber), and we executed differential expression analysis of sequence count data (DEseq).
 
Overall design Differential expression analysis using RNA sequencing
 
Contributor(s) Gazdag E, Kruijsbergen I, Veenstra GC
Citation(s) 26952988
Submission date Jan 19, 2016
Last update date May 15, 2019
Contact name Gert Jan C. Veenstra
Organization name Faculty of Science, Radboud Institute for Molecular Life Sciences
Department Molecular Developmental Biology
Lab Embryonic Gene Regulation
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Platforms (1)
GPL21248 Illumina NextSeq 500 (Xenopus laevis)
Samples (4)
GSM2042204 RNA-seq sample of Gcn5-AS-injected embryos_1
GSM2042205 RNA-seq sample of Gcn5-AS-injected embryos_2
GSM2042206 RNA-seq sample of water-injected control embryos_1
This SubSeries is part of SuperSeries:
GSE76995 Differential expression analysis of Gcn5 knockdown and triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5
Relations
BioProject PRJNA309195
SRA SRP068637

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE76991_Gcn5KD_H2O_DEseq.xls.gz 2.6 Mb (ftp)(http) XLS
GSE76991_XL9.1_annot_v1.8.1.primaryTrs.fa.gz 32.1 Mb (ftp)(http) FA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.