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Series GSE7843 Query DataSets for GSE7843
Status Public on Mar 28, 2008
Title Assessment of CcpA-mediated catabolite control of metabolism and enterotoxin production in Bacillus cereus ATCC 14579
Organism Bacillus cereus ATCC 14579
Experiment type Expression profiling by array
Summary In Bacillus cereus the catabolite control protein CcpA was shown to be involved in optimizing the efficiency of glucose catabolism by activating genes encoding glycolytic enzymes including a non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase that mediates conversion of D-glyceraldehyde 3-phosphate to 3-phospho-D-glycerate in one single step, and by repressing genes encoding the citric acid cycle and gluconeogenic enzymes. Two B. cereus-specific CcpA-regulated operons were identified, encoding enzymes involved in the catabolism of fuculose/arabinose and aspartate. In addition, a genome search using the CRE-site consensus predicted the B. cereus CcpA regulon to include 10 PTS-system gene clusters as well as genes coding for overflow metabolic enzymes leading to acetoin and acetate. Notably, catabolite repression of the genes encoding non-hemolytic enterotoxin (Nhe) and hemolytic (Hbl) enterotoxin appeared CcpA-dependent, and for the corresponding enterotoxin operons, putative CRE-sites were identified. This points to metabolic control of enterotoxin gene expression and suggests that CcpA-mediated glucose sensing provides an additional mode of control to PlcR activated expression of nhe and hbl genes in B. cereus.
Keywords: Time course analysis by comparing transriptomes of the wildtype and the ccpA deleton strain.
 
Overall design The wildtype (B. cereus ATCC 14579) and ccpA deletion strain were sampled during aerobic growth in Brain heart infusion broth. Samples of wildtype and ccpA deletion strain were compared at 4 time points, i.e. early exponential (OD600 0.2), mid-exponential (OD600 0.8), transition phase (OD600 4), and stationary phase (OD600 8). For each time point biological duplo's were obtained, which were subsequently differently labelled to perform a dye swap.
 
Contributor(s) van der Voort M, Kuipers OP, Buist G, de Vos WM, Abee T
Citation(s) 18416820
Submission date May 18, 2007
Last update date Mar 17, 2012
Contact name Menno van der Voort
Organization name Wageningen UR
Department Agrotechnology and Food Sciences Group
Lab Food Microbiology
Street address Bomenweg 2
City Wageningen
ZIP/Postal code 6703 HD
Country Netherlands
 
Platforms (1)
GPL5161 Bacillus cereus ATCC 14579 amplicon-based 12k microarray
Samples (8)
GSM189695 CcpA 0.2 with WT 0.2 (164600)
GSM189722 WT 0.2 with CcpA 0.2 (164601)
GSM189723 CcpA 0.8 with WT 0.8 (164602)
Relations
BioProject PRJNA99971

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE7843_RAW.tar 15.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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