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Series GSE79417 Query DataSets for GSE79417
Status Public on Mar 22, 2016
Title Expression data of Brain CD45+ cells from WT and STI knockout mice after WNV infection
Organism Mus musculus
Experiment type Expression profiling by array
Summary West Nile virus (WNV) is the most important cause of endemic encephalitis in the USA. Strikingly, only a small percentage of patients develop clinical disease and of these patients, approximately 1 out of 150 patients develops encephalitis. The basis for this great variability in disease outcome is unknown, but may be related to the innate immune response. Innate immune responses, critical for control of WNV infection, are initiated by signaling through pathogen recognition receptors (PRR) such as RIG-I and MDA5. IPS-1 is a key adaptor in generating a PRR-dependent interferon response.. Here we show that IPS-1 deficiency in hematopoietic cells resulted in increased mortality and delayed WNV clearance from the brain. In IPS-1-/- mice, a dysregulated immune response was detected, characterized by a massive influx of macrophages and virus-specific T cells into the infected brain. These T cells were multifunctional and were able to lyse peptide-pulsed target cells in vitro. However, virus-specific T cells in the infected IPS-1-/- brain exhibited lower functional avidity than those in C57BL/6 brains, possibly contributing to less efficient virus clearance. The presence of virus-specific memory T cells was also not protective. We also show that macrophages were increased in numbers in the IPS-1-/- brain. Both macrophages and microglia exhibited an activated phenotype. Microarray analyses showed the preferential upregulation of genes associated with leukocyte activation and inflammation. Together, these results demonstrate the critical role that hematopoietic cell expression of Type 1 interferon and other IPS-1-dependent molecules have in WNV clearance and in regulating the inflammatory response.
 
Overall design We used 4 mice in each group. STI knockout mice developed lethath encephalitis after WNV infectin. WT mice which have mild disease after WNV were used as controls.
 
Contributor(s) Zhao J, Vijay R, Perlman S
Citation(s) 27226371
Submission date Mar 21, 2016
Last update date Feb 21, 2018
Contact name Rahul Vijay
E-mail(s) rahul-vijay@uiowa.edu
Phone 3193357576
Organization name University of Iowa
Department Microbiology and Immunology
Lab Butler Lab
Street address 51 Newton Road
City Iowa City
State/province Iowa
ZIP/Postal code 52242
Country USA
 
Platforms (1)
GPL16570 [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
Samples (8)
GSM2094992 STI KO_WNV_Brain_CD45+ cells 1
GSM2094993 STI KO_WNV_Brain_CD45+ cells 2
GSM2094994 STI KO_WNV_Brain_CD45+ cells 3
Relations
BioProject PRJNA315809

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79417_RAW.tar 61.2 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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