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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 15, 2016 |
| Title |
Assessing transcriptomes of mouse cumulus cells, mural granulosa cells, and cumulus-oocyte complexes |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Transcriptomes of mouse mural granulosa cells were sequenced to identify transcripts expressed in mural granulosa cells of ovaries. Moreover, transcriptomes of cumulus cells were compared between those of young (2 month-old) and old mice (10 month-old) to assess the effects of ageing on cumulus cells. In addition, transcriptomes of cumulus-oocyte complexes were compared between DBA/2 and (C57BL/6 x DBA/2)F1 mice to assess the strain differences.
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| Overall design |
RNA-seq of cumulus cells, mural granulosa cells, and cumulus-oocyte complexes
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| Contributor(s) |
Kawasaki K, Sumitomo J, Shiroguchi K, Endo TA, Sugiura K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Apr 15, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Takaho A. Endo |
| E-mail(s) |
takaho.endo@riken.jp
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| Organization name |
RIKEN
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| Department |
IMS
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| Lab |
Laboratory for Integrative Genomics
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| Street address |
1-7-22 Suehiro, Tsurumi
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| City |
Yokohama |
| State/province |
Kanagawa |
| ZIP/Postal code |
230-0045 |
| Country |
Japan |
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| Platforms (1) |
| GPL18480 |
Illumina HiSeq 1500 (Mus musculus) |
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| Samples (10)
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| GSM2124377 |
Cumulus cells (10 month-old), strain: C57BL/6 1 |
| GSM2124378 |
Cumulus cells (10 month-old), strain: C57BL/6 2 |
| GSM2124379 |
Cumulus cells (10 month-old), strain: C57BL/6 3 |
| GSM2124380 |
Cumulus cells (2 month-old), strain: C57BL/6 1 |
| GSM2124381 |
Cumulus cells (2 month-old), strain: C57BL/6 2 |
| GSM2124382 |
COC (3 week-old, PMSG-primed), strain: BDF1 |
| GSM2124383 |
Cumulus cells (2 month-old), strain: C57BL/6 3 |
| GSM2124384 |
Mural granulosa cells (2 month-old), strain: C57BL/6 1 |
| GSM2124385 |
Mural granulosa cells (2 month-old), strain: C57BL/6 2 |
| GSM2124387 |
COC (3 week-old, PMSG-primed), strain: DBA/2 |
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| Relations |
| BioProject |
PRJNA318588 |
| SRA |
SRP073368 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE80326_mouse.fpkm.txt.gz |
699.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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