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Series GSE83522 Query DataSets for GSE83522
Status Public on Jun 15, 2017
Title Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance
Organism Oryza sativa
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Crop breeding aims to balance disease resistance with yield; however, single resistance (R) genes can lead to resistance breakdown, and R gene pyramiding may affect growth fitness. Here we report that the rice Pigm locus contains a cluster of genes encoding nucleotide-binding leucine-rich repeat (NLR) receptors that confer durable resistance to the fungus Magnaporthe oryzae without yield penalty. Among these NLR receptors, PigmR confers broad-spectrum resistance, whereas PigmS competitively attenuates PigmR homodimerization to suppress resistance. PigmS expression, and thus PigmR-mediated resistance, are subjected to tight epigenetic regulation. PigmS increases seed production to counteract the yield cost induced by PigmR Therefore, our study reveals a mechanism balancing high disease resistance and yield through epigenetic regulation of paired antagonistic NLR receptors, providing a tool to develop elite crop varieties.
 
Overall design The small RNA profiles of the leaves of two-weeks seedling of rice variety NIL-Pigm were generated by deep sequence dependent on Illumina Hiseq2000.
 
Contributor(s) Deng Y, Zhu X, Li Q, He Z
Citation(s) 28154240
Submission date Jun 20, 2016
Last update date May 15, 2019
Contact name yiwen Deng
E-mail(s) ywdeng@sibs.ac.cn
Phone 86-21-54924128
Organization name Shanghai Institute for Biological Sciences, Chinese Academy of Sciences
Department Institute of Plant Physiology and Ecology
Lab zuhua He
Street address 300 Fenglin Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL13160 Illumina HiSeq 2000 (Oryza sativa)
Samples (1)
GSM2206883 two-weeks seedling plants
Relations
BioProject PRJNA326250
SRA SRP076806

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83522_RAW.tar 184.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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