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| Status |
Public on Jun 20, 2019 |
| Title |
Expression data from panicle in heat tolerant and heat susceptible rice under high temperature stress |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
To better understand the mechanisms that regulate the heat stress response in rice, we conducted a comparative analysis of transcriptome profile in panicles from two rice lines, heat-tolerant line 252 (HTL252) and heat-susceptible line 082 (HSL082) using rice Affymetrix GeneChip.
In HTL252 panicles, 1538 differentially expressed genes (DEGs) genes with at least four-fold expression changes compared with the control under heat treatment were considered heat-responsive (HR). Of these DEGs, 522 genes were up-regulated while 1016 genes were repressed. Among DEGs in HSL082, 496 genes were induced and 1707 genes were repressed. Out of the 370 common DEGs found between HTL252 and HSL082, 129 genes were induced and 241 genes were repressed.
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| Overall design |
After continuous high temperature treatment for 5d from both lines and each treatment type, panicles were collected for RNA extraction and hybridization on Affymetrix microarrays,For each sample ,three biological replicates.
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| Contributor(s) |
Guilian Z, Liyun C |
| Citation missing |
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| Submission date |
Jun 20, 2016 |
| Last update date |
Jun 21, 2019 |
| Contact name |
Xianwen Zhang |
| E-mail(s) |
xianwenzhang@hunau.edu.cn
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| Phone |
08613875856138
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| Organization name |
Hunan Agricultural University
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| Street address |
1 Nongda Road Furong district
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| City |
Changsha |
| State/province |
Hunan |
| ZIP/Postal code |
410128 |
| Country |
China |
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| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
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| Samples (12)
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| GSM2208784 |
panicle of heat tolerant line 252 under high temperature, biological rep1 |
| GSM2208785 |
panicle of heat tolerant line 252 under high temperature, biological rep2 |
| GSM2208786 |
panicle of heat tolerant line 252 under high temperature, biological rep3 |
| GSM2208787 |
panicle of heat sensitive line 082 under high temperature, biological rep1 |
| GSM2208788 |
panicle of heat sensitive line 082 under high temperature, biological rep2 |
| GSM2208789 |
panicle of heat sensitive line 082 under high temperature, biological rep3 |
| GSM2208790 |
panicle of heat tolerant line 252 under optomal temperature, biological rep1 |
| GSM2208791 |
panicle of heat tolerant line 252 under optimal temperature, biological rep2 |
| GSM2208792 |
panicle of heat tolerant line 252 under optimal temperature, biological rep3 |
| GSM2208793 |
panicle of heat sensitive line 082 under optomal temperature, biological rep1 |
| GSM2208794 |
panicle of heat sensitive line 082 under optimal temperature, biological rep2 |
| GSM2208795 |
panicle of heat sensitive line 082 under optimal temperature, biological rep3 |
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| Relations |
| BioProject |
PRJNA326277 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE83542_RAW.tar |
63.0 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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