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Series GSE99966 Query DataSets for GSE99966
Status Public on Jun 01, 2018
Title Global gene expression analysis of resistant and susceptible apple cultivars challenged with Penicillium expansum
Organism Malus domestica
Experiment type Expression profiling by array
Summary Blue mold, caused by Penicillium expansum, is responsible for postharvest losses of apple fruit, and threatens human health through production of the potent mycotoxin patulin. No major gene(s) providing resistance have as yet been identified, but recent studies indicate a quantitative control of the disease. An AryANE chip covering 60K apple transcripts was used to identify possible candidate gene(s) that are differentially regulated between resistant and susceptible cultivars upon P. expansum infection. Induction of cell wall related gene (PGIP1), and three genes involved in the ‘down-stream’ flavonoid biosynthesis pathway (CHS, FLS and LDOX), shows the fundamental role of cell wall as an important barrier, and contents of polyphenolic compounds of fruits as a quantitative components in enhancing disease resistance to blue mold. Moreover, exogenous application of Jasmonic acid hormone enhanced the defense mechanism in fruits. This is the first report linking Jasmonic acid and activation of cell wall and flavonoid pathway genes in apple fruit resistance to blue mold. Results provide an initial categorization of genes that are potentially involved in the resistance mechanism, and should be useful for developing tools for gene marker-assisted breeding of apple cultivars with an improved resistance to blue mold.
SUBMITTER_CITATION: Ahmadi-Afzadi, M., Orsel Baldwin, M., Pelletier, S., Cournol, M., Proux-Wéra, E., Nybom, H., Renou, J.-P. (2018). Genome-wide expression analysis suggests a role for jasmonates in the resistance to blue mold in apple. Plant Growth Regulation, 85 (3), 375-387. , DOI : 10.1007/s10725-018-0388-2
 
Overall design 4 cultivars (2 resistant and 2 susceptible), each in 3 technical replicates, were inoculated with fungal spores, and samples from control and inoculated fruits were taken in 3 time points.
 
Contributor(s) Ahmadi-Afzadi M, Orsel M, Pelletier S, Bruneau M, Proux-Wéra E, Nybom H, Renou J
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Submission date Jun 13, 2017
Last update date Jul 25, 2021
Contact name Mathilde ORSEL
E-mail(s) mathilde.orsel-baldwin@inra.fr
Organization name IRHS
Street address 42, rue Georges Morel
City Beaucouzé
ZIP/Postal code 49071
Country France
 
Platforms (1)
GPL16374 IRHS_ARyANE_v1 [110411_Mdom_JPR_exp]
Samples (72)
GSM2666648 control_cultivar3_timepoint1_rep1
GSM2666649 Inoculated_cultivar3_timepoint1_rep1
GSM2666650 Inoculated_cultivar3_timepoint1_rep2
Relations
BioProject PRJNA390252

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99966_RAW.tar 181.8 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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