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Sample GSM1019 Query DataSets for GSM1019
Status Public on Feb 12, 2002
Title 25C -- 15 min
Sample type RNA
 
Channel 1
Source name 37C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 25C - 15 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description 25C - 15 min
ScanAlyze version 2.44 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y16-57
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL56
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 513 493 1457 1287 692 613 595 743 865 1608 .844 0 -.752 .453 43 40 2.105 1.684 .475 .594 .369 1005 225 143 160 98 115 -.752
2 505 495 2791 5399 4793 616 606 757 5991 6748 .892 0 1.102 1.5 44 47 .582 .466 1.717 2.147 1.432 757 225 143 160 115 132 1.102
3 498 482 1182 2250 1646 612 604 755 2057 2812 .877 0 .799 1.386 45 45 .718 .575 1.393 1.74 1.127 838 225 142 159 132 149 .799
4 492 477 810 1381 787 605 594 742 984 1726 .654 0 .281 .8 55 55 1.029 .823 .972 1.215 .691 951 156 143 157 150 164 .281
5 485 467 1654 1799 1219 597 580 725 1523 2248 .883 0 -.119 .732 75 69 1.357 1.086 .737 .921 .647 961 156 143 157 169 183 -.119
6 487 473 1502 1449 883 586 566 707 1104 1811 .808 0 -.444 .54 49 40 1.701 1.361 .588 .735 .54 821 225 141 158 186 203 -.444
7 487 473 160 747 180 581 567 708 225 933 .601 0 .492 .881 23 22 .889 .711 1.125 1.406 .62 719 225 141 158 203 220 .492
8 500 481 1085 1758 1199 573 559 698 1499 2197 .859 0 .466 1.023 43 45 .905 .724 1.105 1.382 .894 730 225 141 158 220 237 .466
9 528 512 146 721 157 572 564 705 196 901 .577 0 .425 .986 22 22 .93 .745 1.075 1.342 .53 748 225 140 157 238 255 .425
10 547 530 123 643 82 566 561 701 102 803 .367 0 -.27 .792 19 16 1.5 1.206 .667 .829 .254 730 225 140 157 255 272 -.27
11 551 523 536 1197 647 570 550 687 809 1496 .695 0 .594 1.172 49 41 .828 .663 1.207 1.509 .886 767 225 139 156 272 289 .594
12 515 499 188 660 119 562 541 676 149 825 .416 0 -.335 .683 26 20 1.58 1.262 .633 .793 .32 833 225 137 154 290 307 -.335
13 487 482 1295 1754 1227 541 527 658 1534 2192 .857 0 .244 .974 44 44 1.055 .844 .947 1.185 .746 833 225 137 154 307 324 .244
14 503 492 1257 1451 927 535 524 655 1158 1813 .843 0 -.118 .75 48 42 1.356 1.085 .737 .921 .611 765 225 138 155 326 343 -.118
15 503 488 574 2613 2090 531 523 653 2613 3266 .827 0 2.187 2.986 40 48 .275 .22 3.641 4.552 2.698 730 225 138 155 343 360 2.187
16 511 480 1265 1218 695 535 523 653 869 1522 .897 0 -.542 .595 43 41 1.82 1.456 .549 .687 .497 752 225 138 155 360 377 -.542
17 525 493 1088 1326 801 537 525 656 1001 1657 .363 0 -.12 .822 42 41 1.358 1.087 .736 .92 .26 767 225 137 154 378 395 -.12
18 524 510 1184 1071 550 533 521 651 687 1338 .873 0 -.785 .453 58 44 2.153 1.723 .465 .58 .409 743 225 137 154 395 412 -.785
19 520 509 97 598 78 531 520 650 97 747 .218 0 0 .85 17 11 1.244 1 .804 1 .246 745 225 138 155 412 429 0
20 526 521 224 648 100 562 548 685 125 810 .561 0 -.842 .513 33 18 2.24 1.792 .446 .558 .344 800 225 138 155 430 447 -.842

Total number of rows: 8448

Table truncated, full table size 1027 Kbytes.




Supplementary data files not provided
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