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Sample GSM1047412 Query DataSets for GSM1047412
Status Public on Jul 29, 2013
Title Diffuse astrocytoma [DA3]
Sample type RNA
 
Source name Paediartric brain tumour DA3
Organism Homo sapiens
Characteristics tissue: Diffuse astrocytoma
grade: II
Sex: M
age: 4
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Jul 29, 2013
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE42656 Gene expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
DA3.Detection Pval

Data table
ID_REF VALUE DA3.Detection Pval
ILMN_1343291 42155.05 0
ILMN_1343295 2466.284 0
ILMN_1651199 113.9438 0.3386034
ILMN_1651209 133.363 0.04743083
ILMN_1651210 119.1503 0.2147563
ILMN_1651221 104.0804 0.6416337
ILMN_1651228 3373.17 0
ILMN_1651229 300.2158 0
ILMN_1651230 120.3022 0.1884058
ILMN_1651232 136.0681 0.03689064
ILMN_1651235 123.6568 0.1251647
ILMN_1651236 142.5375 0.01976285
ILMN_1651237 137.2094 0.03030303
ILMN_1651238 120.7912 0.1791831
ILMN_1651249 91.19692 0.9064559
ILMN_1651253 117.3528 0.2490119
ILMN_1651254 1523.42 0
ILMN_1651259 81.14722 0.9828722
ILMN_1651260 97.42982 0.7957839
ILMN_1651262 3320.39 0

Total number of rows: 48803

Table truncated, full table size 1451 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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