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Sample GSM1047425 Query DataSets for GSM1047425
Status Public on Jul 29, 2013
Title Ependymoma [E6]
Sample type RNA
 
Source name Paediartric brain tumour E6
Organism Homo sapiens
Characteristics tissue: Ependymoma
grade: III
Sex: M
age: 6
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Jul 29, 2013
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE42656 Gene expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
E6.Detection Pval

Data table
ID_REF VALUE E6.Detection Pval
ILMN_1343291 42155.05 0
ILMN_1343295 7058.956 0
ILMN_1651199 102.229 0.6956522
ILMN_1651209 121.0772 0.1884058
ILMN_1651210 115.3554 0.3135705
ILMN_1651221 137.5716 0.03030303
ILMN_1651228 4668.652 0
ILMN_1651229 242.9897 0
ILMN_1651230 117.3593 0.2687747
ILMN_1651232 162.0452 0.001317523
ILMN_1651235 112.2251 0.4097497
ILMN_1651236 122.2682 0.1633729
ILMN_1651237 199.309 0
ILMN_1651238 140.2917 0.02371541
ILMN_1651249 100.5901 0.7351779
ILMN_1651253 121.0224 0.1884058
ILMN_1651254 1890.55 0
ILMN_1651259 96.37508 0.8300395
ILMN_1651260 104.2638 0.6350461
ILMN_1651262 3085.268 0

Total number of rows: 48803

Table truncated, full table size 1435 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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