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Sample GSM1047426 Query DataSets for GSM1047426
Status Public on Jul 29, 2013
Title Ependymoma [E7]
Sample type RNA
 
Source name Paediartric brain tumour E7
Organism Homo sapiens
Characteristics tissue: Ependymoma
grade: III
Sex: M
age: 2
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label Cy3
Label protocol Cy3 Standard illumina prorocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in GenomeStudio
 
Submission date Nov 30, 2012
Last update date Jul 29, 2013
Contact name Denise Sheer
E-mail(s) d.sheer@qmul.ac.uk
Phone +442078822595
Organization name Barts & The London School of Medicine & Dentistry
Department Neuroscience & Trauma
Street address Blizard Institute, 4 Newark Street
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE42656 Gene expression profiles for paediatric brain tumours
GSE42658 Expression profiles for paediatric brain tumours

Data table header descriptions
ID_REF
VALUE quantile normalized
E7.Detection Pval

Data table
ID_REF VALUE E7.Detection Pval
ILMN_1343291 42155.05 0
ILMN_1343295 11050.5 0
ILMN_1651199 111.8627 0.3820817
ILMN_1651209 128.2902 0.06455863
ILMN_1651210 111.3593 0.3952569
ILMN_1651221 121.8367 0.1594203
ILMN_1651228 4282.844 0
ILMN_1651229 338.6348 0
ILMN_1651230 115.2178 0.2793149
ILMN_1651232 170.9229 0
ILMN_1651235 117.4556 0.2437418
ILMN_1651236 127.9059 0.07114624
ILMN_1651237 151.9792 0.009222661
ILMN_1651238 154.3963 0.007905139
ILMN_1651249 104.1371 0.6034256
ILMN_1651253 124.8458 0.113307
ILMN_1651254 1598.178 0
ILMN_1651259 96.07644 0.8208169
ILMN_1651260 98.10246 0.7786561
ILMN_1651262 2517.778 0

Total number of rows: 48803

Table truncated, full table size 1426 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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